View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9408_low_5 (Length: 401)
Name: NF9408_low_5
Description: NF9408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9408_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 388
Target Start/End: Original strand, 28537626 - 28537987
Alignment:
| Q |
8 |
aagcagagacagtcgcctgaacaatcggagcatcaatcctcatccgcaatccgggcaagtgaaatattaacatttgcactttgatacattgtgttacatg |
107 |
Q |
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| T |
28537626 |
aagcaaagacagtcgcctgaacaatcggagcatcaatcctcatccgcaatccgggcaagtgaaatattaacatttgcactttgatacattgtgttacatg |
28537725 |
T |
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| Q |
108 |
gaatgtaattaaattttggaaaatcctcactgttggtttcgtctaataatgatattttaatgttttcaaaaggatatctttttatcctcagaaagagttt |
207 |
Q |
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| T |
28537726 |
gaatgtaattaaattttggaaaatcctcactgttggtttcgtctaataatgatattttaatgttttc-------------------ctcagaaagagttt |
28537806 |
T |
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| Q |
208 |
gccttgacccatttcgatttaaattcaagccagtccttaatgcagcatcacaatttaaagaagatttaacttctcccaaggatgaagaagaaccagctga |
307 |
Q |
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| T |
28537807 |
gccttgacccatttcgatttaaattcaagccagtccttaatgcagcatcacaatttaaagaagatttaacttctcccaagggtgaagaagaaccaactga |
28537906 |
T |
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| Q |
308 |
tttcaggatctccactactagcatcctaccattcagacaggacaaatgaaagaaaaactggagacctttcaggactcaaat |
388 |
Q |
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| T |
28537907 |
tttcaggatctccactactagtatcctaccattcagacaggacaaatgaaagaaaaactggagacctttcaggactcaaat |
28537987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 35687383 - 35687544
Alignment:
| Q |
14 |
agacagtcgcctgaacaatcggagcatcaatcctcatccgcaatccgggcaagtgaaatattaacatttgcactttgatacattgtgttacatggaatgt |
113 |
Q |
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| T |
35687383 |
agacagtcgcctaaacaatcggagcagcaatcctcatccgcaatccgagcaagtgaaatattaacatttgcactttgatacagtgtgttacatggaatgt |
35687482 |
T |
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| Q |
114 |
aattaaattttggaaaatcctcactgttggtttcgtctaataatgatattttaatgttttca |
175 |
Q |
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| T |
35687483 |
aattaaattttggaaaatcctcactgttggtttcatctaataatgatattttaatgttttca |
35687544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 176 - 302
Target Start/End: Original strand, 35687574 - 35687700
Alignment:
| Q |
176 |
aaaggatatctttttatcctcagaaagagtttgccttgacccatttcgatttaaattcaagccagtccttaatgcagcatcacaatttaaagaagattta |
275 |
Q |
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| T |
35687574 |
aaaggatttctttttatcctcagaaagagtttgccttgacccatttcgacttaaattcaagccagtccttaatgcagcatcacaatctaaagaagattta |
35687673 |
T |
|
| Q |
276 |
acttctcccaaggatgaagaagaacca |
302 |
Q |
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| T |
35687674 |
acttctcccaagggtgaagaagaacca |
35687700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 35688062 - 35688146
Alignment:
| Q |
304 |
ctgatttcaggatctccactactagcatcctaccattcagacaggacaaatgaaagaaaaactggagacctttcaggactcaaat |
388 |
Q |
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| T |
35688062 |
ctgatttcaggatctccactactagtatcctaccattccgacaggacaaatgaaagaaaaacgggagacctttcaggactcaaat |
35688146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 7724087 - 7724247
Alignment:
| Q |
14 |
agacagtcgcctgaacaatcggagcatcaatcctcatccgcaatccgggcaagtgaaatattaacatttgcactttgatacattgtgttacatggaatgt |
113 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7724087 |
agacagtcgcctgaacaatcggagcagcaatcctcatccacaatccgagcaagtgaaatattaacatttgcactttgatacattgttttacatggaatgt |
7724186 |
T |
|
| Q |
114 |
aattaaattttggaaaatcctcactgttggtttcgtctaataatgatattttaatgttttc |
174 |
Q |
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| T |
7724187 |
aattaaattttagaatatcctcactgttggtttcgtctaataatgatattttaatgttttc |
7724247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 7724275 - 7724320
Alignment:
| Q |
173 |
tcaaaaggatatctttttatcctcagaaagagtttgccttgaccca |
218 |
Q |
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| T |
7724275 |
tcaaaatgatttctttttatcctcagaaagagtttgccttgaccca |
7724320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 44972225 - 44972066
Alignment:
| Q |
14 |
agacagtcgcctgaacaatcggagcatcaatcctcatccgcaatccgggcaagtgaaatattaacatttgcactttgatacattgtgttacatggaatgt |
113 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44972225 |
agacagtcgcctgaacaatcggagcagcaactctcatccgtaatccgagcaagtgaaatattaacatttgcactttgatacattgtgttacatggaatat |
44972126 |
T |
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| Q |
114 |
aattaaattttggaaaatcctcactgttggtttcgtctaataatgatattttaatgtttt |
173 |
Q |
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| T |
44972125 |
aattaaattttggaaaatcctcactgttggtttcctctaataatgatattttaatgtttt |
44972066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 176 - 302
Target Start/End: Complemental strand, 44972031 - 44971905
Alignment:
| Q |
176 |
aaaggatatctttttatcctcagaaagagtttgccttgacccatttcgatttaaattcaagccagtccttaatgcagcatcacaatttaaagaagattta |
275 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| |
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| T |
44972031 |
aaaggatttttttttatcctcagaaagagtttgccttgacccatttcgatttaaactcaagtcagtccttaatgcatcatcacagtttaaagaagattta |
44971932 |
T |
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| Q |
276 |
acttctcccaaggatgaagaagaacca |
302 |
Q |
| |
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||||||||||||| ||||||||||||| |
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| T |
44971931 |
acttctcccaagggtgaagaagaacca |
44971905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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