View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9408_low_6 (Length: 363)

Name: NF9408_low_6
Description: NF9408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9408_low_6
NF9408_low_6
[»] chr3 (5 HSPs)
chr3 (19-262)||(36324260-36324500)
chr3 (287-353)||(31687908-31687974)
chr3 (284-330)||(19766049-19766095)
chr3 (257-295)||(46233983-46234021)
chr3 (59-139)||(36306737-36306817)
[»] scaffold0003 (2 HSPs)
scaffold0003 (261-353)||(43142-43234)
scaffold0003 (284-353)||(36958-37027)
[»] chr6 (3 HSPs)
chr6 (261-353)||(27444127-27444219)
chr6 (261-295)||(31444771-31444805)
chr6 (284-353)||(33054113-33054182)
[»] chr4 (5 HSPs)
chr4 (261-353)||(26720237-26720329)
chr4 (306-353)||(14586807-14586854)
chr4 (284-353)||(3649906-3649975)
chr4 (261-295)||(32651290-32651324)
chr4 (261-295)||(38467731-38467765)
[»] scaffold0152 (1 HSPs)
scaffold0152 (284-352)||(10230-10298)
[»] scaffold0014 (1 HSPs)
scaffold0014 (261-330)||(32615-32684)
[»] scaffold0005 (1 HSPs)
scaffold0005 (306-353)||(230520-230567)
[»] chr8 (3 HSPs)
chr8 (259-295)||(44663703-44663739)
chr8 (284-323)||(19962065-19962104)
chr8 (259-295)||(35348989-35349025)
[»] chr1 (3 HSPs)
chr1 (260-296)||(31771393-31771429)
chr1 (261-295)||(32440669-32440703)
chr1 (260-296)||(7608405-7608441)
[»] chr2 (2 HSPs)
chr2 (261-295)||(4453778-4453812)
chr2 (261-295)||(9208570-9208604)
[»] chr7 (1 HSPs)
chr7 (259-295)||(21820194-21820230)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 9e-95; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 36324500 - 36324260
Alignment:
Q  19 aaaaatgcaaacttttattatgatttcacaactagttagaatatgatcgagactaatccttgttagcatt-atgaaagataaaaaatgctaatcaaaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  36324500 aaaaatgcaaacttttattatgatttcacaactagttagaatatgatcgagagtaatccttgttagcatttatgaaagataaaaaatgctaatcaaaatt 36324401  T
Q  118 actcaatcaatcaacagctgatgatttgatatcttactagctagtacatgccttacaagaaaagattattcataaagctattagagatgaactcgctgnn 217  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  36324400 actcaatcaatcaacagctgatgatttgatatctta----ctagtacatgccttacaagaaaagattattcataaagctattagagatgaactcgctgaa 36324305  T
Q  218 nnnnnnnnnntttggacaggcatattcctacctatcccaagttat 262  Q
              ||||||||||||||||||||||||||||| |||||    
T  36324304 aaaagaaaaatttggacaggcatattcctacctatcccaggttat 36324260  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 31687908 - 31687974
Alignment:
Q  287 acactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttg 353  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31687908 acactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacacctttg 31687974  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 330
Target Start/End: Original strand, 19766049 - 19766095
Alignment:
Q  284 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcc 330  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||    
T  19766049 ttaacactccaaaccctaatcctacttttttaggcgccaaacaatcc 19766095  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 46234021 - 46233983
Alignment:
Q  257 agttatctaacttattcataatcctagttaacactccaa 295  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  46234021 agttatctaacttattcctaatcctagttaacactccaa 46233983  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 36306817 - 36306737
Alignment:
Q  59 atatgatcgagactaatccttgttagcatta-tgaaagataaaaaatgctaatcaaaattactcaatcaatcaacagctgat 139  Q
    |||||||| ||||||||||||  |||||||  || |||||||||| ||||||| ||||||| |||||||| ||||| |||||    
T  36306817 atatgatccagactaatccttaatagcatttgtggaagataaaaa-tgctaataaaaattattcaatcaagcaacatctgat 36306737  T

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Target: scaffold0003 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 261 - 353
Target Start/End: Complemental strand, 43234 - 43142
Alignment:
Q  261 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttg 353  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43234 atctaacttattcctaatcgtagttaacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacacctttg 43142  T

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Target: scaffold0003; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 37027 - 36958
Alignment:
Q  284 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttg 353  Q
    |||||||| |||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||    
T  37027 ttaacacttcaaatcctaattcttcttttttaggcgccaaacaatcctagcccttggatctacacctttg 36958  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 261 - 353
Target Start/End: Original strand, 27444127 - 27444219
Alignment:
Q  261 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttg 353  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27444127 atctaacttattcctaatcgtagttaacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacacctttg 27444219  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 295
Target Start/End: Original strand, 31444771 - 31444805
Alignment:
Q  261 atctaacttattcataatcctagttaacactccaa 295  Q
    ||||||||||||| |||||||||||||||||||||    
T  31444771 atctaacttattcctaatcctagttaacactccaa 31444805  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 33054182 - 33054113
Alignment:
Q  284 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttg 353  Q
    ||||||||  |||||||||   |||||||||||||||||| |||||||| ||||| |||| ||| |||||    
T  33054182 ttaacacttaaaaccctaaacctacttttttaggcgccaatcaatcctaacccttggatcaacatctttg 33054113  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 261 - 353
Target Start/End: Original strand, 26720237 - 26720329
Alignment:
Q  261 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttg 353  Q
    ||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26720237 atctaacttattcctaatcctagttaacactccaaaccctaatcctacttttttaggcgccaaacaatcctagcccttggatctacacctttg 26720329  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 14586854 - 14586807
Alignment:
Q  306 tacttttttaggcgccaaacaatcctagcccttagatctacacctttg 353  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14586854 tacttttttaggcgccaaacaatcctagcccttggatctacacctttg 14586807  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 3649906 - 3649975
Alignment:
Q  284 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttg 353  Q
    ||||||||  ||||||||| | |||||||||||||||||| |||||||| ||||| |||| ||| |||||    
T  3649906 ttaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttg 3649975  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 295
Target Start/End: Complemental strand, 32651324 - 32651290
Alignment:
Q  261 atctaacttattcataatcctagttaacactccaa 295  Q
    ||||||||||||| |||||||||||||||||||||    
T  32651324 atctaacttattcctaatcctagttaacactccaa 32651290  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 295
Target Start/End: Complemental strand, 38467765 - 38467731
Alignment:
Q  261 atctaacttattcataatcctagttaacactccaa 295  Q
    |||||||||||| ||||||||||||||||||||||    
T  38467765 atctaacttatttataatcctagttaacactccaa 38467731  T

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Target: scaffold0152 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 10230 - 10298
Alignment:
Q  284 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacaccttt 352  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  10230 ttaacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacaccttt 10298  T

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Target: scaffold0014 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 261 - 330
Target Start/End: Original strand, 32615 - 32684
Alignment:
Q  261 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaacaatcc 330  Q
    ||||||||||||  |||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  32615 atctaacttatttctaatcctagttaacactccaaaccctaatcctacttttttaggcgccaaacaatcc 32684  T

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Target: scaffold0005 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 230520 - 230567
Alignment:
Q  306 tacttttttaggcgccaaacaatcctagcccttagatctacacctttg 353  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  230520 tacttttttaggcgccaaacaatcctagcccttggatctacacctttg 230567  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 44663739 - 44663703
Alignment:
Q  259 ttatctaacttattcataatcctagttaacactccaa 295  Q
    ||||||||||||||| |||||||||||||||||||||    
T  44663739 ttatctaacttattcctaatcctagttaacactccaa 44663703  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 19962065 - 19962104
Alignment:
Q  284 ttaacactccaaaccctaattttacttttttaggcgccaa 323  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  19962065 ttaacacttaaaaccctaattttacttttttaggcgccaa 19962104  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 35348989 - 35349025
Alignment:
Q  259 ttatctaacttattcataatcctagttaacactccaa 295  Q
    ||||||||||||||  |||||||||||||||||||||    
T  35348989 ttatctaacttatttctaatcctagttaacactccaa 35349025  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 31771429 - 31771393
Alignment:
Q  260 tatctaacttattcataatcctagttaacactccaaa 296  Q
    |||||||||||||| ||||||||||||||||||||||    
T  31771429 tatctaacttattcctaatcctagttaacactccaaa 31771393  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 295
Target Start/End: Complemental strand, 32440703 - 32440669
Alignment:
Q  261 atctaacttattcataatcctagttaacactccaa 295  Q
    ||||||||||||| |||||||||||||||||||||    
T  32440703 atctaacttattcctaatcctagttaacactccaa 32440669  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 7608441 - 7608405
Alignment:
Q  260 tatctaacttattcataatcctagttaacactccaaa 296  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  7608441 tatctaacttattcctaatcctagttaaaactccaaa 7608405  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 295
Target Start/End: Original strand, 4453778 - 4453812
Alignment:
Q  261 atctaacttattcataatcctagttaacactccaa 295  Q
    ||||||||||||| |||||||||||||||||||||    
T  4453778 atctaacttattcctaatcctagttaacactccaa 4453812  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 295
Target Start/End: Original strand, 9208570 - 9208604
Alignment:
Q  261 atctaacttattcataatcctagttaacactccaa 295  Q
    ||||||||||||| |||||||||||||||||||||    
T  9208570 atctaacttattcctaatcctagttaacactccaa 9208604  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 21820230 - 21820194
Alignment:
Q  259 ttatctaacttattcataatcctagttaacactccaa 295  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  21820230 ttatctaacttattcctaatcctaattaacactccaa 21820194  T

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