View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9408_low_7 (Length: 357)
Name: NF9408_low_7
Description: NF9408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9408_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 76 - 347
Target Start/End: Complemental strand, 3591742 - 3591470
Alignment:
| Q |
76 |
gcataagcaatatcgtgaaggctgagattctacctaggatgggg-aggtgaaggttttgtgaaatactgacccggatatcagaacaagtcaatgttcgtg |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
3591742 |
gcataagcaatatcgtgaaggctgagattctacctaggatgggggaggtgaaggttttgtgaaatactgacccggatatcagatcaagtcaatgttcgag |
3591643 |
T |
|
| Q |
175 |
gctttcctccttcgatccaatgatcatgctggaaaagaccacgatccctcctgctggcaatcccatgtgtgacacagttgctcctcacatagtgagggtc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3591642 |
gctttcctccttcgatccaatgatcatgctggaaaagaccacgatccctcctgctggcaatcccatgtgtgacacagttgctcctcacatagtgagggtc |
3591543 |
T |
|
| Q |
275 |
tcgagtcgtgaaattgtggtgcaatcccactttcaagattgcgattttaattacattgactcgttgagtataa |
347 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3591542 |
tcgagtcgtgaaattgtggggcaatcccactttcaagattgcgattttaattacattgactcgttgagtataa |
3591470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 3591801 - 3591763
Alignment:
| Q |
18 |
acacttaccatacaggaaacacaattcttacattttttt |
56 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
3591801 |
acacataccatacaggaaaaacaattcttacattttttt |
3591763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University