View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9408_low_8 (Length: 352)
Name: NF9408_low_8
Description: NF9408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9408_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 39543398 - 39543065
Alignment:
| Q |
1 |
gcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactggtggagaagagggaccaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
39543398 |
gcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaaggaccaaca |
39543299 |
T |
|
| Q |
101 |
tttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtg |
200 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543298 |
tttgtggtatcttcagggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtg |
39543199 |
T |
|
| Q |
201 |
ctggctatgttatgccaatgccaagccctaaaaggaatggcgactggttgctatatatgcaccttcctaagggacacttgcacttcatggaagtccaagc |
300 |
Q |
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| T |
39543198 |
ctggctatgttatgccaatgccaagccctaaaaggaatggtgattggttgctctacatgcaccttcctaagggacacttgcacttcatggaggtccaagc |
39543099 |
T |
|
| Q |
301 |
tcctcatttctttagaccagtctcttgggattac |
334 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
39543098 |
ccctcatttctttagaccagtctcttgggattac |
39543065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 39553417 - 39553084
Alignment:
| Q |
1 |
gcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactggtggagaagagggaccaaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
39553417 |
gcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaaggaccaaca |
39553318 |
T |
|
| Q |
101 |
tttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtg |
200 |
Q |
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||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553317 |
tttgttgtatcttcagggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtg |
39553218 |
T |
|
| Q |
201 |
ctggctatgttatgccaatgccaagccctaaaaggaatggcgactggttgctatatatgcaccttcctaagggacacttgcacttcatggaagtccaagc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
39553217 |
ctggctatgttatgccaatgccaagccctaaaaggaatggtgattggttgctctacatgcaccttcctaagggacacttgcacttcatggaggctcaagc |
39553118 |
T |
|
| Q |
301 |
tcctcatttctttagaccagtctcttgggattac |
334 |
Q |
| |
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||| ||||||||||||||| |||||||||||||| |
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| T |
39553117 |
tccccatttctttagaccaatctcttgggattac |
39553084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 2 - 333
Target Start/End: Complemental strand, 39586523 - 39586192
Alignment:
| Q |
2 |
catttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactggtggagaagagggaccaacat |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||| ||| ||||| |||| |
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| T |
39586523 |
catttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatggaccgacat |
39586424 |
T |
|
| Q |
102 |
ttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtgc |
201 |
Q |
| |
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||||||||||||| ||||| || ||| ||||||||||||| ||||| |||||||||||||| ||| |||||||||||||| ||||||| || ||| ||| |
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| T |
39586423 |
ttgtggtgtcttctgggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtggtgatgc |
39586324 |
T |
|
| Q |
202 |
tggctatgttatgccaatgccaagccctaaaaggaatggcgactggttgctatatatgcaccttcctaagggacacttgcacttcatggaagtccaagct |
301 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||| || |||||||| || ||| | |||||||||| | ||||||| ||||||| | ||||| |
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| T |
39586323 |
gggctacgttatgccaatgcctagtcctaaaaggaatggtgattggttgctctacatgaatcttcctaaggaatacttgcatttcatggtggctgaagct |
39586224 |
T |
|
| Q |
302 |
cctcatttctttagaccagtctcttgggatta |
333 |
Q |
| |
|
|| ||||||||||||||| |||| |||||||| |
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| T |
39586223 |
ccccatttctttagaccaatctcatgggatta |
39586192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 17503135 - 17502996
Alignment:
| Q |
101 |
tttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtg |
200 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| || ||||| |||||||||||||| || |||||||| ||| || |||||||||||||||||| | |
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| T |
17503135 |
tttgtggtatcttccgggcaaagatttccggaagacaaggtggattttggatggggaaaagttgtgtttgcatcctaccattttccttggggaggtgaag |
17503036 |
T |
|
| Q |
201 |
ctggctatgttatgccaatgccaagccctaaaaggaatgg |
240 |
Q |
| |
|
|||| ||||| |||||||||||||||||| ||||||||| |
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|
| T |
17503035 |
ctggttatgtgatgccaatgccaagccctctaaggaatgg |
17502996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 17475021 - 17474882
Alignment:
| Q |
101 |
tttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtg |
200 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||| || |||||||| ||| || |||||||| ||||| ||| |
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| T |
17475021 |
tttgtggtatcttccgggcaaagatttccagaagacaaggtggattttggatggggaaaagttgtgtttgcatcctaccattttccatggggtggtgaaa |
17474922 |
T |
|
| Q |
201 |
ctggctatgttatgccaatgccaagccctaaaaggaatgg |
240 |
Q |
| |
|
|||| ||||| |||||||||||||||||| ||||||||| |
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|
| T |
17474921 |
ctggttatgtgatgccaatgccaagccctttaaggaatgg |
17474882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 17503213 - 17503152
Alignment:
| Q |
17 |
attgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcac |
78 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |||||||| | ||||||| ||||| |||| |
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| T |
17503213 |
attgattgggtggaagcacatcgacctgttcctggattggcgaagatttatagtggtggcac |
17503152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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