View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9408_low_9 (Length: 346)
Name: NF9408_low_9
Description: NF9408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9408_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 41586082 - 41585764
Alignment:
| Q |
12 |
caaaggagagaacttttaggctacttagatgctatgggttgagtgctttaatgagtttcttaggttgagaaacaattgtaaatatcatgatgagtgaaaa |
111 |
Q |
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| T |
41586082 |
caaaggagagaacttttaggctacttatatgctacgggttgagtgctttgatgagtttcttaggttgagaaacaattgtaaatatcatggtgagtgaaaa |
41585983 |
T |
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| Q |
112 |
tcatttagtcttaaaaacaattgttcatgcttgatgtgtcaccacgttgaacacacgtaaaacattatcgcgaagcattaataacatctttcatgcacat |
211 |
Q |
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| T |
41585982 |
tcattgagtcttaaaaacaattgttcatgcttgatgtgtcaccacattgaacacacataaaacattatcgcgaagcattaataacatctttcatgcacat |
41585883 |
T |
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| Q |
212 |
tatggcacacatgctgggctcaaattgaacattttattttccataagtacaagcgtctatgacgactaaaggtctgggcctataaattattgtggtttta |
311 |
Q |
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| T |
41585882 |
tatggcacacatgttgggctcaaattgaacatttcattttccataagtacaagtgtctatggcgactaaaggcctgggccaataaactattgtggtttta |
41585783 |
T |
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| Q |
312 |
gcctttaggtactaaaaag |
330 |
Q |
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| T |
41585782 |
gcctttaggtactaaaaag |
41585764 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 3148227 - 3148167
Alignment:
| Q |
63 |
tgagtttcttaggttgagaaacaattgtaaatatcatgatgagtgaaaatcatttagtctt |
123 |
Q |
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| T |
3148227 |
tgagattcttaggttgggaaacaattgtaaacattttggtgagtgaaaataattgagtctt |
3148167 |
T |
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