View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9409_high_4 (Length: 390)
Name: NF9409_high_4
Description: NF9409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9409_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 38782543 - 38782919
Alignment:
| Q |
1 |
cacaaattcaggttctataaagtagatatgttggcaaaatatcatattcattacgttataaaccgaaagataatatacttgtcatttctcatgcaattat |
100 |
Q |
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| T |
38782543 |
cacaaattcaggttctataaagtagatatgttggcaaaatatcatattcatcaccttataaaccgaaagataatatacttgtcattcctcatgcaattat |
38782642 |
T |
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| Q |
101 |
gtcacgatgcattaaaaacaagatgattatagtgaccccgtaccattttgagccaactgttttcttactttaatcacaaatgtaataaaaattattatta |
200 |
Q |
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| T |
38782643 |
gtcacgatgcattaaaaacaagatgattatagtgaccccgtaccattttgagccaactgttttcttactttaatcacaaatgtaataaaaattattatta |
38782742 |
T |
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| Q |
201 |
tatcagtagtaaatattagtataatgtttgggtgaaaattttatgtctcggataaatccttgattcagttatttatctaagaagaatgctatgcatagcg |
300 |
Q |
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| T |
38782743 |
tatcagtagtaaatat---tataatgtttgggtgaaatttttttgtctcggataaatccttgattcagttatttatctaagaagaatgctatgcatagcg |
38782839 |
T |
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| Q |
301 |
aaggatttagtcacgaaattttcacgatgactaaaattgcaaactgccttttgttttagaaaagacggaaatcacctttg |
380 |
Q |
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| T |
38782840 |
aaggatttagtcacgaaattttcacgatgactaaaattgcaaactgccttttgttttggaaaagacggaaatcacctttg |
38782919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 39729440 - 39729488
Alignment:
| Q |
332 |
taaaattgcaaactgccttttgttttagaaaagacggaaatcacctttg |
380 |
Q |
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| T |
39729440 |
taaaattgcacactgccttttgttttggaaaagacggaaatcacctttg |
39729488 |
T |
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