View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9409_low_1 (Length: 740)
Name: NF9409_low_1
Description: NF9409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9409_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 54 - 585
Target Start/End: Original strand, 47665426 - 47665951
Alignment:
| Q |
54 |
tgtcggagtgttagttagactcgttcaacacctccaactcggaagtgtgtgcgttttgacaaaacgtgaagcttggaagcgtgcgtgtaccacaagtttt |
153 |
Q |
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| T |
47665426 |
tgtcggagtgttagttagactcgttcaacacctccaactcggaagtgtgt----tttgacaaaacgtgaagcttggaagcgtgcgtgtaccacaagtttt |
47665521 |
T |
|
| Q |
154 |
gagtattttgaccagccatnnnnnnntgaaagaaaacatgcgttaccatggccttacctaaaaaataaacaaaggacataaagtagaaatgtatag---- |
249 |
Q |
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| T |
47665522 |
gagtattttgaccagccataaaaaaatgaaagaaaacatgcgttaccatggcct------aaaaataaacaaaggacataaagtagaaatgtatagtata |
47665615 |
T |
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| Q |
250 |
-----atttaataagagaaatatttcaagtttcaattaaagtaataatattaatactcatacttattattacgtggacatccgtgatgtgaatgcttagc |
344 |
Q |
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| T |
47665616 |
aacagatttaataagagaaatatttcaagtttcaattaaagtaataatattaatactcatacttattattacgtggacatccgtgatgtgaatgcttagc |
47665715 |
T |
|
| Q |
345 |
aatgtaaaggaaatttcaagatgtttgaattatacatacatacatacaagttgcacatttctttgaaaacttcaatacgcggaatatttggtcaactaaa |
444 |
Q |
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| T |
47665716 |
aatgtaaaggaaatttcaagatgtttgaattatacatacatacatacaagttgcacatttctttgaaaacttcaatacgcggaatatttggtcaactaaa |
47665815 |
T |
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| Q |
445 |
ttaattaataaatcaaaacctcgtcttatataaactttaaacatctctttcaaatttcattaaacacatatttacattccaccttcattaaaattaaatc |
544 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47665816 |
ttaattaataaatcaaaacctcgtcttatataaactttaaacatctctttcaaatttcattaaacacatatttacattccaccttcatta-----aaatc |
47665910 |
T |
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| Q |
545 |
cctagctaatccattctctcttcttttgaagttctgatcac |
585 |
Q |
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| T |
47665911 |
cctagctaatccattctctcttcttttgaagttctgatcac |
47665951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 621 - 725
Target Start/End: Original strand, 47665947 - 47666051
Alignment:
| Q |
621 |
atcacacaaattaattatgggtagcaataacatgataaagttgttcttgttgacaacattaattcttcttgtattgagtatagagaacacaagtgcagca |
720 |
Q |
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| T |
47665947 |
atcacacaaattaattatgggtagcaataacatgataaagttgttcttgttgacaacattaattcttcttgtattgagtatagagaacacaagtgcagca |
47666046 |
T |
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| Q |
721 |
agaac |
725 |
Q |
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||||| |
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| T |
47666047 |
agaac |
47666051 |
T |
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