View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9409_low_16 (Length: 287)
Name: NF9409_low_16
Description: NF9409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9409_low_16 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 31745107 - 31745393
Alignment:
| Q |
1 |
aaagagtctataccaattaccaaaataatagactctctctagtcctatttaaaataaatatttaggttaacaaacgttaatggatctagtccaattattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31745107 |
aaagagtctataccaattaccaaaataatatactctctctagtcctatttaaaataaatatttaggttaacaaacgttaatggatctggtccaattattt |
31745206 |
T |
|
| Q |
101 |
aactagattcattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagtattttatagtaagagaatgagattcaataatttattaaa |
200 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31745207 |
aactagatacatcaacttttattgatttaaatgtctttttataaaaaggaccggatggagtattttatagtaagagaataagattcaataatttattaaa |
31745306 |
T |
|
| Q |
201 |
aaatactaaaaatggtaattgtaaactttgaacatatttttaagcaccattttcgtccatatacttttcttgctgattaccaaggca |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
31745307 |
aaatactaaaaatggtaattgtaaactttgaacatatttttaagcaccattttggtccatatacttttcttgctgattaccgaggca |
31745393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 10069312 - 10069229
Alignment:
| Q |
56 |
aaatatttaggttaacaaacgttaatggatctagtccaattatttaactagattcattaacttttgttgatttaaatgtctttt |
139 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||||||| |||||| |||| ||| ||||||| |||| | ||||||||||| |
|
|
| T |
10069312 |
aaatatttaggtcaacaaaagttaatgtatctagtccaattttttaaccagatacataaacttttattgactcaaatgtctttt |
10069229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 32045160 - 32045211
Alignment:
| Q |
110 |
cattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagta |
162 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||||| |||||||||||||||| |
|
|
| T |
32045160 |
cattaacttttgttgagttaaatatc-ttttataaataggatcggagggagta |
32045211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 9213572 - 9213512
Alignment:
| Q |
105 |
agattcattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagtatttt |
166 |
Q |
| |
|
|||| ||| |||||||||||| | ||||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
9213572 |
agatacatcaacttttgttgactaaaatgtctttt-ataaataggaccggagggagtatttt |
9213512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University