View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9409_low_23 (Length: 253)

Name: NF9409_low_23
Description: NF9409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9409_low_23
NF9409_low_23
[»] chr5 (10 HSPs)
chr5 (15-238)||(13447078-13447301)
chr5 (15-238)||(13419527-13419750)
chr5 (15-238)||(13426418-13426641)
chr5 (20-237)||(13413183-13413400)
chr5 (15-239)||(13388997-13389221)
chr5 (15-127)||(13385176-13385288)
chr5 (17-126)||(13454143-13454252)
chr5 (180-234)||(13454035-13454089)
chr5 (173-239)||(13393562-13393628)
chr5 (15-88)||(13393404-13393477)
[»] chr4 (2 HSPs)
chr4 (160-239)||(47601348-47601427)
chr4 (17-57)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 13447301 - 13447078
Alignment:
Q  15 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13447301 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatat 13447202  T
Q  115 tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447201 tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag 13447102  T
Q  215 cactttgtgattcgcattcctgat 238  Q
    ||||||||||||||||||||||||    
T  13447101 cactttgtgattcgcattcctgat 13447078  T

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Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 13419750 - 13419527
Alignment:
Q  15 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat 114  Q
    |||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||  |||||||||| |||||| |    
T  13419750 aggttggaagcaaagtagaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatct 13419651  T
Q  115 tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag 214  Q
    ||||||||||||| | | || |||    ||||    ||  |||| ||||||||||||  |||| |||||||||| |||||||||||||||||||||||||    
T  13419650 tgagaattactgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgag 13419551  T
Q  215 cactttgtgattcgcattcctgat 238  Q
    ||||||||||||||||||||||||    
T  13419550 cactttgtgattcgcattcctgat 13419527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 13426641 - 13426418
Alignment:
Q  15 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat 114  Q
    |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||| |    
T  13426641 aggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtcgttcatgcgaaaattgtgcggaagatct 13426542  T
Q  115 tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag 214  Q
    ||||||||||||| || || | ||    ||||    || ||||| |||||||||||   |||| ||||||||||  |||||||||||||||||||| |||    
T  13426541 tgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggaggttattccgactcaatggttgcagatgag 13426442  T
Q  215 cactttgtgattcgcattcctgat 238  Q
    ||||||||||||||||||||||||    
T  13426441 cactttgtgattcgcattcctgat 13426418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 13413400 - 13413183
Alignment:
Q  20 ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgaga 119  Q
    |||||||||||  | |||||||||||||||||||||||||| || || ||| || ||||||||||||| || ||  || |||||   ||| || ||||||    
T  13413400 ggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttgattgattcatgtcgatcatgccaagattgtaatgacaatcttgaga 13413301  T
Q  120 attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt 219  Q
    |||||||| |||||| |      ||||    ||  |||| ||||||||| ||  |||| |||||||||| ||||||||||||||||||||||||||||||    
T  13413300 attactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatggaaccgtcacttatggaggttactccgactcaatggttgcagacgagcactt 13413201  T
Q  220 tgtgattcgcattcctga 237  Q
    ||||||||||||||||||    
T  13413200 tgtgattcgcattcctga 13413183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 13388997 - 13389221
Alignment:
Q  15 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat 114  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||||||||||||||||||| || ||| |||||||||  ||| || |    
T  13388997 aggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgttgacaatct 13389096  T
Q  115 tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag 214  Q
    ||| ||||||||  ||| || ||||   ||||    ||  |||| ||| ||||| || | ||| ||||||||||  || |||||| |||||||||| |||    
T  13389097 tgaaaattactgtcccacatttactttcacatgtggtgccaagtatcgcgatggaacgagcacatatggaggttattctgactcattggttgcagatgag 13389196  T
Q  215 cactttgtgattcgcattcctgatg 239  Q
     |||| ||| ||| |||||||||||    
T  13389197 aacttcgtggttcacattcctgatg 13389221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 13385176 - 13385288
Alignment:
Q  15 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat 114  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||||  ||||||||||||| || ||| |||||||||  ||| || |    
T  13385176 aggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgttgacaatct 13385275  T
Q  115 tgagaattactgc 127  Q
    ||| |||||||||    
T  13385276 tgaaaattactgc 13385288  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 13454252 - 13454143
Alignment:
Q  17 gtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattg 116  Q
    |||||||||||||| |||||||| ||||||||||||| |||||| ||||||| | |||||||||| ||||  || ||| |||||||||  ||  || |||    
T  13454252 gtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttg 13454153  T
Q  117 agaattactg 126  Q
    ||||||||||    
T  13454152 agaattactg 13454143  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 13454089 - 13454035
Alignment:
Q  180 atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc 234  Q
    ||||||| ||||| |||||||||||| | ||||||||||||||| ||||||||||    
T  13454089 atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattcc 13454035  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 13393562 - 13393628
Alignment:
Q  173 atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatg 239  Q
    ||||| |||||||| | ||| ||||||||||||||||| ||||||||| |  ||| |||||||||||    
T  13393562 atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatg 13393628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 13393404 - 13393477
Alignment:
Q  15 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgt 88  Q
    |||| |||||||||||| | ||||| ||| ||||||||||||| || ||||||| | | |||||||| ||||||    
T  13393404 aggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgtgggatgcttagttgattcgtgtcgt 13393477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 47601427 - 47601348
Alignment:
Q  160 tcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatg 239  Q
    |||||||||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| |||||| ||||    
T  47601427 tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcccgatg 47601348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 47601570 - 47601530
Alignment:
Q  17 gtgggaagcaaagtaaaaaagtttaaagttggagacaaagt 57  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  47601570 gtgggaagcaaagtagaaaagttcaaagttggagacaaagt 47601530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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