View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9409_low_25 (Length: 252)
Name: NF9409_low_25
Description: NF9409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9409_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 52088438 - 52088683
Alignment:
| Q |
1 |
atcaaatctgaaaatatataagcttcccacattctcattaaagaggtttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
52088438 |
atcaaatctgaaaatatataagcttcccacattctaattaaagaggtttgggaaaaatacattcatctcccttgaggtctctttaaacgacacagacacc |
52088537 |
T |
|
| Q |
101 |
ccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52088538 |
ccctctattttcttatttaacattgacctcccctattatttgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgt |
52088637 |
T |
|
| Q |
201 |
tgcctctcgctgatgtgaatttaacttctctgcaatcaacaccaaa |
246 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52088638 |
tgcctctcgttgatgtgaatttaacttctctgcaatcaacaccaaa |
52088683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 52077636 - 52077881
Alignment:
| Q |
1 |
atcaaatctgaaaatatataagcttcccacattctcattaaagaggtttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
52077636 |
atcaaatctgaaaatatataagcttcccacattctaattaaagaggtttgggaaaaatacattcatctcccttgaggtctctttaaaagacacagacacc |
52077735 |
T |
|
| Q |
101 |
ccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52077736 |
ccctctattttcttatttaacattgacctcccctattatttgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgt |
52077835 |
T |
|
| Q |
201 |
tgcctctcgctgatgtgaatttaacttctctgcaatcaacaccaaa |
246 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
52077836 |
tgcctctcgttgatgtgaatttaacttctctgcaataaacaccaaa |
52077881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 29058635 - 29058388
Alignment:
| Q |
1 |
atcaaatctgaaaatatataagcttcccacattctcattaaagaggtttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacacc |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
29058635 |
atcatatctgaaaatatttaagcttcccacattctaattacagaggtttgagaaaaatacattaatctctcttgaggtctctttaaatgacacagacacc |
29058536 |
T |
|
| Q |
101 |
ccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaa--gaaaaact-at |
197 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| || |
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|
| T |
29058535 |
cccactattttcttatttaacattgacctcccctattatttgacactgtttaacttccgtcaagttatttttatcaaacaaaaaaaaagaaaaaactaat |
29058436 |
T |
|
| Q |
198 |
tgttgcctctcgctgatgtgaatttaacttctctgcaatcaacaccaaa |
246 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||| |||||||||||| |
|
|
| T |
29058435 |
tgttgcctctcgttgatgt-aatttaacttctctgcgatcaacaccaaa |
29058388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 43899059 - 43898996
Alignment:
| Q |
48 |
ttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctatttt |
111 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||| ||||| || |||||||||||||||| |
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|
| T |
43899059 |
ttgggaaaactatattcatctcccttgaggtctcttgaaatgtaactcacaccccctctatttt |
43898996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 29594743 - 29594988
Alignment:
| Q |
1 |
atcaaatctgaaaatatataagcttcccacattctcattaaagaggtttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
29594743 |
atcaaatctgaaaatatataagcttcccacattctaattaaagaggtttgggaaaaatacattcatctcccttgaggtctctttaaatgacacagacacc |
29594842 |
T |
|
| Q |
101 |
ccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29594843 |
ccctctattttcttatttaacattgacctcccctattatttgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgt |
29594942 |
T |
|
| Q |
201 |
tgcctctcgctgatgtgaatttaacttctctgcaatcaacaccaaa |
246 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29594943 |
tgcctctcgttgatgtgaatttaacttctctgcaattaacaccaaa |
29594988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 11353611 - 11353724
Alignment:
| Q |
50 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgt |
149 |
Q |
| |
|
||||||||||| |||| || |||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||| ||| | |
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|
| T |
11353611 |
gggaaaaatacgttcacctcccttaaggtctcgttaaatgacacagacaccccctctattttcttatttaacaatgacctcccctactgtttaacacctt |
11353710 |
T |
|
| Q |
150 |
ttaacttccgtcaa |
163 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11353711 |
ttaacttccgtcaa |
11353724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 4564336 - 4564436
Alignment:
| Q |
74 |
gaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaagttattttta |
173 |
Q |
| |
|
||||||||||||||| | ||| ||||||| |||||||| |||| ||||| |||| |||| |||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
4564336 |
gaggtctctttaaataatacaaacaccccttctatttttttatctaacaatgacctcccatattgtttgacatcgtttaacttccgtcaaattattttta |
4564435 |
T |
|
| Q |
174 |
t |
174 |
Q |
| |
|
| |
|
|
| T |
4564436 |
t |
4564436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 4558105 - 4558211
Alignment:
| Q |
73 |
tgaggtctctttaaatgacacagacaccccctcta-ttttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaagttatttt |
171 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | || |||| |||||||||| |||| |||||| || ||| |||| |||||||| |||| ||||||| |
|
|
| T |
4558105 |
tgaggtctctttaaataacacaaacaccccttttattttttttatttaacaatgacctcccctgttgtttaacatcctttaactttgatcaaattatttt |
4558204 |
T |
|
| Q |
172 |
tatcaaa |
178 |
Q |
| |
|
||||||| |
|
|
| T |
4558205 |
tatcaaa |
4558211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 12142133 - 12142073
Alignment:
| Q |
50 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctatttt |
111 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
12142133 |
gggaaaaatacactcatctcccttgaggtctctttaaatgacgccgaca-cccctctatttt |
12142073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 44539625 - 44539564
Alignment:
| Q |
50 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctatttt |
111 |
Q |
| |
|
|||||||||||||||| || || |||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
44539625 |
gggaaaaatacattcacctcccctgagttttctttaaatgacagagacaccccctctatttt |
44539564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 24153192 - 24153249
Alignment:
| Q |
50 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctcta |
107 |
Q |
| |
|
||||||| |||| ||| |||||||||||||| || |||||| |||||||||| ||||| |
|
|
| T |
24153192 |
gggaaaattacactcaccttccttgaggtctattaaaatgagacagacacccactcta |
24153249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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