View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9409_low_3 (Length: 725)
Name: NF9409_low_3
Description: NF9409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9409_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 680; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 1 - 716
Target Start/End: Original strand, 41845896 - 41846611
Alignment:
| Q |
1 |
tataagctatgtctcaagacaagtgaaacagagtcatttatcaaatgttacaaatagaaaacaataaataacaactcatgcaatttaaataacgatgcaa |
100 |
Q |
| |
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||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41845896 |
tataagctatgtctcaagacaagtgcaacaaagtcatttatcaaatattacaaatagaaaacaataaataacaactcatgcaatttaaataaccatgcaa |
41845995 |
T |
|
| Q |
101 |
ttagaagaggattaaagagatcagttccattccatcgtcgagcaatgaataacactagtgctattaagctaagcaatcttcagtcgtggcaagtgaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41845996 |
ttagaagaggattaaagagatcagttccattccatcgttgagcaatgaataacactagtgctattaagctaagcaatcttcagtcgtggcaagtgaaggt |
41846095 |
T |
|
| Q |
201 |
gaaagtgaattgcgagattcatcataatcctctcttagaggagattgttccaccctaatatcctcgatcatcttaacaacatccaacattgttggccttt |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846096 |
gaaagtgaatcgcgagattcatcataatcctctcttagaggagattgttccaccctaatatcctcgatcatcttaacaacatccaacattgttggccttt |
41846195 |
T |
|
| Q |
301 |
tctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttcttgtacctcaaaagttcttgatcaaacacctc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846196 |
tctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttcttgtacctcaaaagttcttgatcaaacacctc |
41846295 |
T |
|
| Q |
401 |
tgatgtccactcatccttcacaacagaccgaacccattttggaagatcagcttcttgttcttcaaattccacgcaagagcgaactcctacgggagaagaa |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41846296 |
tgatgtccactcatccttcacaacagaccgaacccattttggaagatcagcttcttgttcttcaaattccacgcaagagcgaactcctactggagaagaa |
41846395 |
T |
|
| Q |
501 |
tactgagaggaaggagctcttcctgtcaaaatttccaacaccaatactccaaaagcatacacgtctgcctcttgtgaaagcttcttagcttccgcctgtt |
600 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846396 |
tactgagaggaaggagctcttcctgtcaaaacttccaacaccaatactccaaaagcatacacgtctgcctcttgtgaaagcttcttagcttccgcctgtt |
41846495 |
T |
|
| Q |
601 |
ctggagccctgtacccacccagccttgcaactgcgtgagcagggtttaataatagtgacaaaccaaagtcacctatgcaagcaaccccattcttgtcaag |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846496 |
ctggagccctgtacccacccagccttgcaactgcgtgagcagggtttaataacagtgacaaaccaaagtcacctatgcaagcaaccccattcttgtcaag |
41846595 |
T |
|
| Q |
701 |
tatcacatttgatgat |
716 |
Q |
| |
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|||||||||||||||| |
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| T |
41846596 |
tatcacatttgatgat |
41846611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 176 - 448
Target Start/End: Complemental strand, 26890927 - 26890655
Alignment:
| Q |
176 |
atcttcagtcgtggcaagtgaaggtgaaagtgaattgcgagattcatcataatcctctcttagaggagattgttccaccctaatatcctcgatcatctta |
275 |
Q |
| |
|
||||||||| |||| || ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||| ||||| || |||||||| ||||| ||| |
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| T |
26890927 |
atcttcagtggtgggaatggaaggtgaaagcgaattgcgtgattcgtcatagtcctcacacagaggagattgctccactctgatatcctcaatcatttta |
26890828 |
T |
|
| Q |
276 |
acaacatccaacattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttcttgtacc |
375 |
Q |
| |
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| T |
26890827 |
acaacatctaccatagttggcctcttctctggctgctgcaccacacaagccaacccaacatgcagcattgacacaagctcttcctcaatgttcttgtatc |
26890728 |
T |
|
| Q |
376 |
tcaaaagttcttgatcaaacacctctgatgtccactcatccttcacaacagaccgaacccattttggaagatc |
448 |
Q |
| |
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|| ||||||||||||||| ||||| |||||||| || |||| || || ||||||||||| |||||||| |
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| T |
26890727 |
gcagaagttcttgatcaaaaacctccccagtccactcttctctcacgactgatcgaacccatttgggaagatc |
26890655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 596 - 716
Target Start/End: Complemental strand, 26890507 - 26890387
Alignment:
| Q |
596 |
ctgttctggagccctgtacccacccagccttgcaactgcgtgagcagggtttaataatagtgacaaaccaaagtcacctatgcaagcaaccccattcttg |
695 |
Q |
| |
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|||||| || || ||||||||||||| | |||| ||| ||| |||||||||| | ||||||||| ||||||||| |||||||||||| || |||||| |
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| T |
26890507 |
ctgttcaggtgctctgtacccacccaatcgtgcagttgcatgaacagggtttaacagtagtgacaacccaaagtcagatatgcaagcaacaccgttcttg |
26890408 |
T |
|
| Q |
696 |
tcaagtatcacatttgatgat |
716 |
Q |
| |
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||||||| ||||| |||||| |
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|
| T |
26890407 |
tcaagtagtacattggatgat |
26890387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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