View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9409_low_34 (Length: 216)
Name: NF9409_low_34
Description: NF9409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9409_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 29594622 - 29594462
Alignment:
| Q |
1 |
aaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttagttttgtttgtgttcattgggatttttatcatcagaagctcttgc |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29594622 |
aaggtgttcaagatcaaactggtggtatattaacgttaatatctttgttattttagttttgtttgtgttcattgggatttttatcattagaagctcttgc |
29594523 |
T |
|
| Q |
101 |
aaaacttatacacatatcagataaccttcacgccaaattactggagaatgacaagaagaat |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29594522 |
aaaacttatacacatatcagataaccttcacgccaaattactggagaatggcaagaagaat |
29594462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 52077515 - 52077355
Alignment:
| Q |
1 |
aaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttagttttgtttgtgttcattgggatttttatcatcagaagctcttgc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52077515 |
aaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttagttttgtttgtgttcattgggatttttatcattagaagctcttgc |
52077416 |
T |
|
| Q |
101 |
aaaacttatacacatatcagataaccttcacgccaaattactggagaatgacaagaagaat |
161 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
52077415 |
aaaacttatacccatatcagataaccttcacgccaaattagtggagaatggcaagaagaat |
52077355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 29058756 - 29058916
Alignment:
| Q |
1 |
aaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttagttttgtttgtgttcattgggatttttatcatcagaagctcttgc |
100 |
Q |
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|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29058756 |
aaggtgttcaagatcaaactagtggtatattgatgttaatatctttgttattttagttttgtttgtgttcattgggatttttatcattagaagctcttgc |
29058855 |
T |
|
| Q |
101 |
aaaacttatacacatatcagataaccttcacgccaaattactggagaatgacaagaagaat |
161 |
Q |
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|
||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
29058856 |
aaaacttatacccatatcagataaccttcacttcaaattactggagaatggcaagaagaat |
29058916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 29059084 - 29059126
Alignment:
| Q |
158 |
gaataaattaaatgatatatctatgattgtaacatcaactttc |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
29059084 |
gaataaattaaatgatatatctatggttgtaacatcaactttc |
29059126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 52077187 - 52077145
Alignment:
| Q |
158 |
gaataaattaaatgatatatctatgattgtaacatcaactttc |
200 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52077187 |
gaataaattaaatgatatatctatggttgtaacatcaactttc |
52077145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 51288665 - 51288793
Alignment:
| Q |
1 |
aaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttagttttgtttgtgttcattggga-tttttatcatcagaagctcttg |
99 |
Q |
| |
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|||||||| ||||||| || ||| | ||||| |||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||| || |||||||| |
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| T |
51288665 |
aaggtgttaaagatcacaccggtag-atattgatgttagtatctttgctattttagttttgtttgtgttcagtgggattttttatcattaggagctcttg |
51288763 |
T |
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| Q |
100 |
caaaacttatacacatatcagataaccttc |
129 |
Q |
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||||| |||||| ||||||||||||||||| |
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| T |
51288764 |
caaaatttatacccatatcagataaccttc |
51288793 |
T |
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