View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9409_low_5 (Length: 607)
Name: NF9409_low_5
Description: NF9409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9409_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 484; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 14 - 590
Target Start/End: Complemental strand, 14340767 - 14340191
Alignment:
| Q |
14 |
aggaatgacaagtattagttctataaccaaattgctatataatagttggattggatattgaaccggttatatctctgttggttcaattggttttatcgac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
14340767 |
aggaatgacaagtattagttctataaccaagttgctatataataattggattggatattgaaccggttatatctccgttggttcaattgtttttatcgac |
14340668 |
T |
|
| Q |
114 |
tcaacccatgattgaaccagatgacatgcaagtgttgnnnnnnnnnnnnnn-taatgaaaatcaattaaaccaataccggttccacttggttcaatcata |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340667 |
tcaacc-atgattgaaccagatgacatgcaagtgttgaaaaaggaaaaaaaataatgaaaatcaattaaaccaataccggttccacttggttcaatcata |
14340569 |
T |
|
| Q |
213 |
ctacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaatttctttggttgctaattattacctgcactgcttggg |
312 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14340568 |
ctacaatataactggaatcaaaccaatcgccaaacttgataataatgcatcaacgaggcttaatttctttggttgctaattatcacctgcactgcttggg |
14340469 |
T |
|
| Q |
313 |
tgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatcattttgtccaatatcaat |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
14340468 |
tgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccatagctaatatcattttgtccaatatcaat |
14340369 |
T |
|
| Q |
413 |
ggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaataacatcacatatataggttcagttttt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340368 |
ggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaataacatcacatatataggttcagttttt |
14340269 |
T |
|
| Q |
513 |
caccattcacttctttttcatgtcacaaaaattgcaaataataaaccaaaatgagaatgcaaattttatgagaaattt |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340268 |
caccattcacttctttttcatgtcacaaaaattgcaaataataaaccaaaatgagaatgcaaattttatgagaaattt |
14340191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 14 - 590
Target Start/End: Complemental strand, 3601887 - 3601321
Alignment:
| Q |
14 |
aggaatgacaagtattagttctataaccaaattgctatataatagttggattggatattgaaccggttatatctctgttggttcaattggttttatcgac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
3601887 |
aggaatgacaagtattagttctataaccaaattgctatataatgattggattggatattgaaccggttatatctccgttgtttcaattggttttatcgac |
3601788 |
T |
|
| Q |
114 |
tcaacccatgattgaaccagatgacatgcaagtgttgnnnnnnnnnnnnnntaatgaaaatcaattaaaccaataccggttccacttggttcaatcatac |
213 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3601787 |
tcaacc-atgattgaaccagatgaca----agtgttgaaaaaggaaaaaa-taatgaaaatcaattaaaccaataccggttcaacttggttcaatcatac |
3601694 |
T |
|
| Q |
214 |
tacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaatttctttggttgctaattattacctgcactgcttgggt |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601693 |
tacaatgtaactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaatttctttggttgctaattattacctgcactgcttgggt |
3601594 |
T |
|
| Q |
314 |
gaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatcattttgtccaatatcaatg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3601593 |
gaattggctcaagatatcaggaattgaccttctaacttcttcctctgaagagttcggcttctgcagaccatagccaatatcattttgtccaatatcaatg |
3601494 |
T |
|
| Q |
414 |
gtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaataacatcacatatataggttcagtttttc |
513 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
3601493 |
gtgtaaatggcttttgagaaatcttcagtccttggaacgccacttctgagaggtggttctgtccctataaatgacatcac----ataggttcagtttttc |
3601398 |
T |
|
| Q |
514 |
accattcacttctttttcatgtcacaaaaattgcaaataataaaccaaaatgagaatgcaaattttatgagaaattt |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
3601397 |
accattcacttctttttcatgtcacaaaaattgcaaataataaacaaaaatgagaatgcaaatttgatgagaaattt |
3601321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 177 - 448
Target Start/End: Complemental strand, 3568732 - 3568467
Alignment:
| Q |
177 |
attaaaccaataccggttccacttggttcaatcatactacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaat |
276 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568732 |
attaaaccaatagatgttcaacttggtgcaatcatactgcaatgtaaccgtaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaat |
3568633 |
T |
|
| Q |
277 |
ttctttggttgctaattattacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctg |
376 |
Q |
| |
|
||||||||| | | | ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
3568632 |
ttctttggtggttgctaattacctgcactgcttgggagaattggctcaagatgtcaggaattgaccttctaacttgttcctctgaaga------cttctg |
3568539 |
T |
|
| Q |
377 |
cagaccataaccaatatcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttgg |
448 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||||| ||||||||||| || |||||||||| | ||||||| |
|
|
| T |
3568538 |
cagaccaaagccaatatcattttgtgcaatatcaattgtgtaaatggccttagagaaatctttagtccttgg |
3568467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 3590957 - 3590710
Alignment:
| Q |
16 |
gaatgacaagtattagttctataaccaaattgctatataatagttggattggatattgaaccggttatatctctgttggttcaattggttttatcgactc |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
3590957 |
gaatgacaactattagttctataaccaaaatgctatataataattggattggagattgaaccggtccggg---tgttggttcgattggttttatcggctc |
3590861 |
T |
|
| Q |
116 |
aacccatgattgaaccagatgacatgcaagtgttgnnnnnnnnnnnnnntaatgaaaatcaattaaaccaataccggttccacttggttcaatcatacta |
215 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
3590860 |
aacc-atgattgaaccagatgaca----agtgttaaaaattgaaaaaaa-aatgaaaatcaattaaaccaataccggttcaacttagttcaatcatactg |
3590767 |
T |
|
| Q |
216 |
caatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggct |
272 |
Q |
| |
|
|||| |||| |||| ||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
3590766 |
caatgtaacaggaaacaaaccaattgccaaacttaataataatgtatcaacaaggct |
3590710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 512 - 590
Target Start/End: Complemental strand, 3576968 - 3576890
Alignment:
| Q |
512 |
tcaccattcacttctttttcatgtcacaaaaattgcaaataataaaccaaaatgagaatgcaaattttatgagaaattt |
590 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
3576968 |
tcaccattcacttctttttaatgtcacaaatattgcaaataataaacaaaaaggagaatgcaaatttgatgagaaattt |
3576890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 3590708 - 3590634
Alignment:
| Q |
294 |
attacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttc |
368 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||| ||||| |||| |
|
|
| T |
3590708 |
attacctgcactgcttggaagaattggctcaagatatcaggaaatgaccttctaacttgttcctttgaagtgttc |
3590634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 512 - 570
Target Start/End: Complemental strand, 3568404 - 3568346
Alignment:
| Q |
512 |
tcaccattcacttctttttcatgtcacaaaaattgcaaataataaaccaaaatgagaat |
570 |
Q |
| |
|
||||||||||| |||||| ||||||| ||| |||||||||||||||| ||||||||||| |
|
|
| T |
3568404 |
tcaccattcacgtcttttgcatgtcaaaaagattgcaaataataaacaaaaatgagaat |
3568346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 3568870 - 3568817
Alignment:
| Q |
31 |
gttctataaccaaattgctatataatagttggattggatattgaaccggttata |
84 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||| |||| ||| |||||| |
|
|
| T |
3568870 |
gttctaaaaccaaattgctatataataattggattggagattgtacctgttata |
3568817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 6e-48; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 263 - 587
Target Start/End: Complemental strand, 1408906 - 1408594
Alignment:
| Q |
263 |
caacaaggcttaatttctttggttgctaattattacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaa |
362 |
Q |
| |
|
|||||||||||||| |||||||| | || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1408906 |
caacaaggcttaatatctttggtggttacaaattacctgcactgcttgggagaattggctcaagatatcaggaattgaccttttaacttgttcctctgaa |
1408807 |
T |
|
| Q |
363 |
gagttcggcttctgcagaccataaccaatatcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctga |
462 |
Q |
| |
|
| | ||||| | |||| ||| ||||||||||||||||||||| ||||||| ||| || ||||| || ||| |||||||||| |||||| ||| |
|
|
| T |
1408806 |
gtg------ttctgtaaaccaatggcaagatcattttgtccaatatcaattgtgtaaagggccttagagaattcctcattccttggaagaccacttttga |
1408713 |
T |
|
| Q |
463 |
gaggtggttctgtccctataaataacatcacatatataggttcagtttttcaccat--tcacttctttttcatgtcacaaaaattgcaaataataaacca |
560 |
Q |
| |
|
||||| |||||||||||||||| | ||| ||||||||||| ||||| | || | ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1408712 |
aaggtgattctgtccctataaatcaaatc----atataggttca-attttctctatcataggttctttttcatgtcacaaagattgcaaataataaac-- |
1408620 |
T |
|
| Q |
561 |
aaatgagaatgcaaattttatgagaaa |
587 |
Q |
| |
|
|| |||||||||||| | |||||||| |
|
|
| T |
1408619 |
-aaagagaatgcaaatatgatgagaaa |
1408594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 294 - 479
Target Start/End: Complemental strand, 1416861 - 1416682
Alignment:
| Q |
294 |
attacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatat |
393 |
Q |
| |
|
||||||| ||||| ||||| ||| | |||||| || |||||||||||||||| ||||| ||||||||||| || || | ||||| | ||| || |
|
|
| T |
1416861 |
attaccttcactgattgggagaaattgctcaatatttcaggaattgacctttgaacttgttcctctgaagtgtat------tgaaaaccatgagcaagat |
1416768 |
T |
|
| Q |
394 |
cattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
479 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| || |||||||| ||| ||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
1416767 |
cattttgtccaatatcaattgtgtaaagggccttagagaaatcctcaggccttggaagaccacttttgagagatggttctgtccct |
1416682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 294 - 479
Target Start/End: Complemental strand, 1412011 - 1411832
Alignment:
| Q |
294 |
attacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatat |
393 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || |||||||||||||||| ||||| ||| ||||||| || | | | | |||||| ||| || |
|
|
| T |
1412011 |
attaccttcactgcttgggacaattggctcaatatttcaggaattgacctttgaacttgttcttctgaagtgt--gtc----gaaaaccataggcaagat |
1411918 |
T |
|
| Q |
394 |
cattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
479 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| || ||||| || ||| || |||||| |||||| ||||||| ||||| |||||| |
|
|
| T |
1411917 |
cattttgtccaatatcaattgtgtaaagggccttagagaagtcctcaggccctggaagaccacttttgagaggcggttccgtccct |
1411832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 1409293 - 1409169
Alignment:
| Q |
17 |
aatgacaagtattagttctataaccaaattgctatataatagttggattggatattgaaccggttatatctc----tgttggttcaattggttttatcga |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||| || | |||||| |||||| | ||| | |||||||||||||||||||| | |
|
|
| T |
1409293 |
aatgacaagtattagttctaaaaccaaattgctatataatagtcggactgaagattgaa-cggttaaacctccgagtcttggttcaattggttttatc-a |
1409196 |
T |
|
| Q |
113 |
ctcaacccatgattgaaccagatgaca |
139 |
Q |
| |
|
| | ||| ||||||||||||||||| |
|
|
| T |
1409195 |
gttgaaccacgattgaaccagatgaca |
1409169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 1409118 - 1409071
Alignment:
| Q |
190 |
cggttccacttggttcaatcatactacaatataactggaatcaaacca |
237 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
1409118 |
cggttcaacttggttcaatcatactgcaatataatcggaatcaaacca |
1409071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 479
Target Start/End: Complemental strand, 1421228 - 1421141
Alignment:
| Q |
392 |
atcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
479 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||| | |||| || ||| ||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
1421228 |
atcatttagtccaatatcaattgtgtaaagggccgtacagaagtcctcaggccttggaagaccacttttgagagatggttctgtccct |
1421141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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