View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9409_low_7 (Length: 471)
Name: NF9409_low_7
Description: NF9409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9409_low_7 |
 | |
|
| [»] scaffold0039 (2 HSPs) |
| | |
|
| [»] scaffold0064 (3 HSPs) |
| | |
|
| [»] scaffold0024 (1 HSPs) |
| |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 21840778 - 21840399
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
21840778 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaaccttttttacacatttcccttc |
21840679 |
T |
|
| Q |
101 |
cttattctatcattacaagctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaaacacaaaatgcagaaaaataaatcacaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21840678 |
cttattctatcattacaagctcatttttaagtttctgcaacttatgccatgttatgcaacagagaaacaaacacaaaatgcagaaaaataaatcacaagt |
21840579 |
T |
|
| Q |
201 |
ttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatcca |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
21840578 |
ttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttggacatgcattttaagcaattcagcca |
21840479 |
T |
|
| Q |
301 |
aacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21840478 |
aacaacataatcataagttcgcacagctctaatttagacccaacatacgcaagttaacaatttcagacacttgcctacat |
21840399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 71 - 380
Target Start/End: Complemental strand, 18452131 - 18451822
Alignment:
| Q |
71 |
ataggaaacttgttttacacatttcccttccttattctatcattacaagctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaa |
170 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||| || |
|
|
| T |
18452131 |
atagaaaacttgttttacacatttccctttcttattctatcattacaagctcatttttaagtttctgcaacttatgccatgttatgcaatagagaaagaa |
18452032 |
T |
|
| Q |
171 |
acacaaaatgcagaaaaataaatcacaagtttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgac |
270 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18452031 |
acacaaaatgcagaaaaataaattacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgac |
18451932 |
T |
|
| Q |
271 |
tttggacatgcattttaaacaattcatccaaacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcac |
370 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18451931 |
tttggacatgcattttaaacaattcagccaaacaacataatcataagttcgcacaactctaatttagacccaacatacgcaagttaacaatttcagacac |
18451832 |
T |
|
| Q |
371 |
ttgcctacat |
380 |
Q |
| |
|
|||||||||| |
|
|
| T |
18451831 |
ttgcctacat |
18451822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 18447581 - 18447495
Alignment:
| Q |
385 |
tccataagactaccaactccaccgagataaatccctaccatgtatccttttagaaatccttttctacataaatggtcgtacactaca |
471 |
Q |
| |
|
||||||||||| || || ||||| ||||||||| | ||||||||||||||| ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
18447581 |
tccataagactttcatcttcaccgtgataaatccattccatgtatccttttacaaatcctttgctacataaatggtcgaacactaca |
18447495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 25408796 - 25409175
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25408796 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaactaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttc |
25408895 |
T |
|
| Q |
101 |
cttattctatcattacaagctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaaacacaaaatgcagaaaaataaatcacaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25408896 |
cttattctatcattacaagctcatttttcagtttctgcaacttatgccttgttatgcaacaaagaaacaaacacaaaatgcagaaaaataaatcacaagt |
25408995 |
T |
|
| Q |
201 |
ttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatcca |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | ||| |
|
|
| T |
25408996 |
ttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttggacacgcattttaaacaattaagcca |
25409095 |
T |
|
| Q |
301 |
aacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25409096 |
aacaacataatcataagttcgcacagctctaaattaaacccagcatacgcaagttaacaatttcagacacttgcctacat |
25409175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 25404234 - 25404599
Alignment:
| Q |
15 |
acctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttccttattctatcatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25404234 |
acctcgcacaaataaaaaccaaaacaacaactaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttccttattctatcatt |
25404333 |
T |
|
| Q |
115 |
acaagctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaaacacaaaatgcagaaaaataaatcacaagtttgcacaaacacca |
214 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25404334 |
acaagctcatttttcagtttctgcaacttatgccttgttatgcaacaaagaaacaaacacaaaatgcagaaaaataaatcacaagtttgcacaaacacca |
25404433 |
T |
|
| Q |
215 |
caaattgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaagataatcat |
314 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||| |
|
|
| T |
25404434 |
caaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttggacacgcattttaaacaattaagccaaacaacataatcat |
25404533 |
T |
|
| Q |
315 |
aagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
||||| |||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25404534 |
aagttcgcacagctctaaattaaacccagcatacgcaagttaacaatttcagacacttgcctacat |
25404599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 19097560 - 19097936
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19097560 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaaca-agtcaacatagccgcaaataggaaacttgttttacacatttcctttc |
19097658 |
T |
|
| Q |
101 |
cttattctatcattacaagctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaaacacaaaatgcagaaaaataaatcacaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | ||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19097659 |
cttattctatcattacaagctcatttttaatattctgcaacttatgccatattatgcaacagagaaacaaacacaa--tgcagaaaaataaatcacaagt |
19097756 |
T |
|
| Q |
201 |
ttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatcca |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
19097757 |
ttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatctgactttggacacgcattttaaacaattcagcca |
19097856 |
T |
|
| Q |
301 |
aacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
19097857 |
aacaacataatcataagttcgcacagctctaatttagacccaacatatgcaagttaacaatttcagacacttgcctacat |
19097936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 24952985 - 24952607
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttc |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24952985 |
tcaacaagtgttataccttacacaaataaaaactaaaacaacaagtaaaacacactcaacataaccgcaaataggaaatttgttttacacatttcccttc |
24952886 |
T |
|
| Q |
101 |
cttattctatcattacaagctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaaacacaaaatgcagaaaaataaatcacaagt |
200 |
Q |
| |
|
||||||||||||| | |||| |||||||||||| | |||||||||| ||||||| |||| | ||||||| |||||||||||||||||||||||||| | |
|
|
| T |
24952885 |
cttattctatcataa-aagcccatttttaagttcctgtaacttatgccatgttatggaacacataaacaaatacaaaatgcagaaaaataaatcacaaat |
24952787 |
T |
|
| Q |
201 |
ttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatcca |
300 |
Q |
| |
|
| ||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||| | |||| |||||||||||| ||| |
|
|
| T |
24952786 |
tcgcacaaacaccccaaattgtagaaacaaaatttatgcataaaattctgcaacacaatcaaaatccaacattgggtacgcatcttaaacaattcagcca |
24952687 |
T |
|
| Q |
301 |
aacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
||||| |||||| || |||||||| |||||||||||||| ||| ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
24952686 |
aacaacgtaatcacaaatttgcacaactctaatttagaccatacacacgtaagttaacaatttcagacacttgcctacat |
24952607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 20311854 - 20311721
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
20311854 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacacgtaaaacacagtcaacatagccgcaaataggaaacctgttttacacatttccctac |
20311755 |
T |
|
| Q |
101 |
cttattctatcattacaagctcatttttaagttt |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
20311754 |
cttattctatcattacaagctcatttttaagttt |
20311721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 25404712 - 25404786
Alignment:
| Q |
285 |
ttaaacaattcatccaaacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaaca |
359 |
Q |
| |
|
|||||||||| | | ||| || |||||||||| || |||||||||||||| |||||| ||| |||||| |||||| |
|
|
| T |
25404712 |
ttaaacaattaagcaaaataacataatcataaattcgcacagctctaattcagaccctacacacgcaacttaaca |
25404786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 25409288 - 25409362
Alignment:
| Q |
285 |
ttaaacaattcatccaaacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaaca |
359 |
Q |
| |
|
|||||||||| | | ||| || |||||||||| || |||||||||||||| |||||| ||| |||||| |||||| |
|
|
| T |
25409288 |
ttaaacaattaagcaaaataacataatcataaattcgcacagctctaattcagaccctacacacgcaacttaaca |
25409362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 329
Target Start/End: Complemental strand, 24952557 - 24952454
Alignment:
| Q |
225 |
aaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaagataatcataagtttgcac |
324 |
Q |
| |
|
||||||||| |||||||||| || || ||||||| || |||||||| || ||| ||| |||||||||||| ||||| || ||||||||| || |||| |
|
|
| T |
24952557 |
aaacaaaatatatgcataaagttttgcaacacaaacagaatccgaccctgcacacacatcttaaacaattcagccaaa-aacgtaatcataaattcgcac |
24952459 |
T |
|
| Q |
325 |
agctc |
329 |
Q |
| |
|
||||| |
|
|
| T |
24952458 |
agctc |
24952454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 20144093 - 20144471
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20144093 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaaattgttttacacatttcccttc |
20144192 |
T |
|
| Q |
101 |
cttattctatcattacaagctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaaacacaaaatgcagaaaaataaatcacaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20144193 |
cttattctatcattacaagctcatttttaagtttctgcaacttatgtcatattatgcaacaaagaaacaaacacaaaatgcagaaaaataaatcacaagt |
20144292 |
T |
|
| Q |
201 |
ttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatcca |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||| |
|
|
| T |
20144293 |
ttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttgg-cacgcattttaaacaattcagcca |
20144391 |
T |
|
| Q |
301 |
aacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20144392 |
aacaacataatcataagttcgcacagctctaaattaaacccagcatacgcaagttaacaatttcagacacttgcctacat |
20144471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 3539680 - 3540079
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3539680 |
tcaacaagtgttgtacctcgcacaaataaaaacaaaaacaacaagtaaaacacagtcaacatagtcgcaaatcggaaacttgttttacacatttcccttc |
3539779 |
T |
|
| Q |
101 |
cttattctatcattacaag-----------------ctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaaacacaaaatgcag |
183 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| | ||||||||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
3539780 |
cttattctatcattacaattattctatcattacaaacgcatttttaagtttgtgcaacttatgtcatgtaatgcaacagagaaacaaacacaaaatgcag |
3539879 |
T |
|
| Q |
184 |
aaaaataaatcacaagtttgcacaaacaccacaa---attgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatg |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
3539880 |
aaaaataaatcacaagtttgcacaaacaccacaacaaattgcagaaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttggacacg |
3539979 |
T |
|
| Q |
281 |
cattttaaacaattcatccaaacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
||| |||||||||||| |||||||| ||||||||||||| ||||| |||||||| |||||||||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
3539980 |
catcttaaacaattcagccaaacaacataatcataagttcgcacaactctaattcagacccaacacacgcaagttcacaatttcaggcacttgcctacat |
3540079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 225 - 380
Target Start/End: Original strand, 3540129 - 3540284
Alignment:
| Q |
225 |
aaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaagataatcataagtttgcac |
324 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| || |||||||| || ||| ||| |||||||||||| | ||||| |||||||||| || ||| |
|
|
| T |
3540129 |
aaacaaaatatatgcataaaattctacaacacaaacataatccgaccctgcacacacatcttaaacaattcagcataacaacataatcataaattcacac |
3540228 |
T |
|
| Q |
325 |
agctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
| || ||||| |||||| ||| |||||| | ||| |||||| ||||||||||||| |
|
|
| T |
3540229 |
aactttaattcagaccctacacacgcaactaaactgtttcaggcacttgcctacat |
3540284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 20144584 - 20144658
Alignment:
| Q |
285 |
ttaaacaattcatccaaacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaaca |
359 |
Q |
| |
|
|||||||||| | | ||| || |||||||||| || |||||||||||||| |||||| ||| |||||| |||||| |
|
|
| T |
20144584 |
ttaaacaattaagcaaaataacataatcataaattcgcacagctctaattcagaccctacacacgcaacttaaca |
20144658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 21232358 - 21231979
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21232358 |
tcaacaagtgttgtacctcgcacaaataaaaaccgaaacaataagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacattttccttc |
21232259 |
T |
|
| Q |
101 |
cttattctatcattacaagctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaaacacaaaatgcagaaaaataaatcacaagt |
200 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21232258 |
cttattccatcattacaatctcatttttaagtttctgcaacttatgtcatgttatgcaacagagaaacaaacacaaaatgcagaaaaataaatcacaagt |
21232159 |
T |
|
| Q |
201 |
ttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatcca |
300 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
21232158 |
ttgcacaaacaccacaaattgcataaccaaaatttagacataaaattctgcaacacaatcaaaatccgactttggacacgcattttaaacaattcagcca |
21232059 |
T |
|
| Q |
301 |
aacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
21232058 |
aacaacataatcataagttcgcaaagctctaatttaaacccaacatacgcaagttaacaatttcaaacacttgtctacat |
21231979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 380
Target Start/End: Complemental strand, 21231738 - 21231583
Alignment:
| Q |
225 |
aaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaagataatcataagtttgcac |
324 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| || |||| ||| || ||| ||| |||||||||| | | |||||| |||||||||| ||||||| |
|
|
| T |
21231738 |
aaacaaaatatatgcataaaattctacaacacaaacagaatctgaccctgcacacacatcttaaacaattaagcaaaacaacataatcataaatttgcac |
21231639 |
T |
|
| Q |
325 |
agctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
|||||||||| |||||| ||| | |||| |||||| |||||| ||||||||||||| |
|
|
| T |
21231638 |
agctctaattcagaccctacacaagcaacttaacagtttcaggcacttgcctacat |
21231583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 22829859 - 22829799
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaaca |
61 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22829859 |
tcaacaagttttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacactcaaca |
22829799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 380
Target Start/End: Complemental strand, 21231863 - 21231790
Alignment:
| Q |
307 |
ataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
|||||||||| || |||||| ||||||| |||||| ||| |||||| |||||| |||||| ||||||||||||| |
|
|
| T |
21231863 |
ataatcataaattcgcacagttctaattcagaccctacacacgcaacttaacagtttcaggcacttgcctacat |
21231790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 71 - 380
Target Start/End: Original strand, 9817754 - 9818063
Alignment:
| Q |
71 |
ataggaaacttgttttacacatttcccttccttattctatcattacaagctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaa |
170 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||| || |
|
|
| T |
9817754 |
atagaaaacttgttttacacatttccctttcttattctatcattacaagctcatttttaagtttctgcaacttatgccatgttatgcaatagagaaagaa |
9817853 |
T |
|
| Q |
171 |
acacaaaatgcagaaaaataaatcacaagtttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgac |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9817854 |
acacaaaatgcagaaaaataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgac |
9817953 |
T |
|
| Q |
271 |
tttggacatgcattttaaacaattcatccaaacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcac |
370 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9817954 |
tttggacatgcattttaaacaattcagccaaacaacataatcataagttcgcacagctctaatttagacccaacatacgcaagttaacaatttcagacac |
9818053 |
T |
|
| Q |
371 |
ttgcctacat |
380 |
Q |
| |
|
|||||||||| |
|
|
| T |
9818054 |
ttgcctacat |
9818063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 9824739 - 9824825
Alignment:
| Q |
385 |
tccataagactaccaactccaccgagataaatccctaccatgtatccttttagaaatccttttctacataaatggtcgtacactaca |
471 |
Q |
| |
|
||||||||||| || || ||||| ||||||||| | ||||||||||||||| ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
9824739 |
tccataagactttcatcttcaccgtgataaatccattccatgtatccttttacaaatcctttgctacataaatggtcgaacactaca |
9824825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 14581553 - 14581499
Alignment:
| Q |
197 |
aagtttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgt |
251 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14581553 |
aagttagcacaaacaacacaaattgcataaacaaaatttatgcataaaattctgt |
14581499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 71 - 380
Target Start/End: Original strand, 25475291 - 25475598
Alignment:
| Q |
71 |
ataggaaacttgttttacacatttcccttccttattctatcattacaagctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaa |
170 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| || |
|
|
| T |
25475291 |
atagaaaacttgttttacacatttcccttccttattctatcattacaagctcatttttaagtttctgcaacttatgccatgttatgcaacagagaaagaa |
25475390 |
T |
|
| Q |
171 |
acacaaaatgcagaaaaataaatcacaagtttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgac |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25475391 |
acacaaaatgcagaaaaataaatcacaagtttgcacaaacaccacaaattgcataaac--aatttatgcataaaattctgcaacacaatcaaaatccgac |
25475488 |
T |
|
| Q |
271 |
tttggacatgcattttaaacaattcatccaaacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcac |
370 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25475489 |
tttggacatgcattttaaacaattcagccaaacaacataatcataagttcgcacagctctaatttagacccaacatacgcaagttaacaatttcagacac |
25475588 |
T |
|
| Q |
371 |
ttgcctacat |
380 |
Q |
| |
|
|||||||||| |
|
|
| T |
25475589 |
ttgcctacat |
25475598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 71 - 380
Target Start/End: Original strand, 19482586 - 19482895
Alignment:
| Q |
71 |
ataggaaacttgttttacacatttcccttccttattctatcattacaagctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaa |
170 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| || |
|
|
| T |
19482586 |
atagaaaacttgttttactattttcccttccttattctatcattacaagctcatttttaagtttctgcaacttatgccatgttatgcaacagagaaagaa |
19482685 |
T |
|
| Q |
171 |
acacaaaatgcagaaaaataaatcacaagtttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgac |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19482686 |
acacaaaatgcagaaaaataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgac |
19482785 |
T |
|
| Q |
271 |
tttggacatgcattttaaacaattcatccaaacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcac |
370 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19482786 |
tttggacatgcattttaaacaattcagccaaacaacataatcataagttcgcacagctctaatttagacccaacatacgcaagttaacaatttcagacac |
19482885 |
T |
|
| Q |
371 |
ttgcctacat |
380 |
Q |
| |
|
|||||||||| |
|
|
| T |
19482886 |
ttgcctacat |
19482895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 25604818 - 25604745
Alignment:
| Q |
12 |
tgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttt |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25604818 |
tgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagtcgcaaataggaaacttgttt |
25604745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 19489772 - 19489858
Alignment:
| Q |
385 |
tccataagactaccaactccaccgagataaatccctaccatgtatccttttagaaatccttttctacataaatggtcgtacactaca |
471 |
Q |
| |
|
||||||||||| || || ||||| ||||||||| | ||| ||||||||||| ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
19489772 |
tccataagactttcatcttcaccgtgataaatccattccacgtatccttttacaaatcctttgctacataaatggtcgaacactaca |
19489858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 86898 - 86523
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
86898 |
tcaacaagtgttatacctcgcacaaataaaaataaaaacaacaagtaaaacacactcaacataaccgcaaatagaaaatttgttttacacatttcccttc |
86799 |
T |
|
| Q |
101 |
cttattctatcattacaagctcatttttaagttttttcaacttatgccctgttatgcaacagagaaacaaacacaaaatgcagaaaaataaatcacaagt |
200 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||| ||| || |||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
86798 |
cttattctatcatgacaagcccatttttaagtttttgcaatttttgccatgttatgcaacacataaacaaacacaaaatgcagaaaaataaatcacaagt |
86699 |
T |
|
| Q |
201 |
ttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatcca |
300 |
Q |
| |
|
| ||||||||||||||||||| | ||||||||||||||||||||||| || |||||||| |||||||||| || |||| |||| |||||||||||| ||| |
|
|
| T |
86698 |
tcgcacaaacaccacaaattgcagaaacaaaatttatgcataaaattttgcaacacaataaaaatccgacctttgacacgcatcttaaacaattcagcca |
86599 |
T |
|
| Q |
301 |
aacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||| |||||| ||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
86598 |
aacaacataatcataagttcatacaactctaattcagaccc----tacacaaggtaacaatttcatgcacttgcctacat |
86523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 225 - 380
Target Start/End: Complemental strand, 86473 - 86318
Alignment:
| Q |
225 |
aaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaagataatcataagtttgcac |
324 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||| || |||||||| ||| ||| |||||||||||||||| |||||||| |||||||||| | |||| |
|
|
| T |
86473 |
aaacaaaatatatgcataaaattttgcaacacaaacagaatccgaccttgcacacacattttaaacaattcagccaaacaacataatcataaaatcgcac |
86374 |
T |
|
| Q |
325 |
agctctaatttagacccaacatacgcaagttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
||||| |||| | |||| | | |||||| ||||||||||||| ||||||||||||| |
|
|
| T |
86373 |
agctcgaattcaaaccctaaacacgcaacttaacaatttcaggcacttgcctacat |
86318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 130; Significance: 4e-67; HSPs: 3)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 163 - 377
Target Start/End: Complemental strand, 15254 - 15044
Alignment:
| Q |
163 |
agaaacaaacacaaaatgcagaaaaataaatcacaagtttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaacacaatcaa |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
15254 |
agaaacaaacacaaaatgcagaaaaataaatcaaaagttcgcacaaacaccacaaattgcaaaaacaaaatttatgcataaaattttgcaacacaatcaa |
15155 |
T |
|
| Q |
263 |
aatccgactttggacatgcattttaaacaattcatccaaacaagataatcataagtttgcacagctctaatttagacccaacatacgcaagttaacaatt |
362 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
15154 |
aatccgaccttggacacgcatcttaaacaattcagccaaacagcataatcataagttcacacaactctaatttagaccc----tacacaagttaacaatt |
15059 |
T |
|
| Q |
363 |
tcagtcacttgccta |
377 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
15058 |
tcaggcacttgccta |
15044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15347 - 15274
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaatag |
74 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| | |||||||| |
|
|
| T |
15347 |
tcaacaagtgttatacctcgcacaaattaaaaccaaaacaacaagtaaaacacactcaacataactgcaaatag |
15274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 365
Target Start/End: Complemental strand, 14991 - 14851
Alignment:
| Q |
225 |
aaacaaaatttatgcataaaattctgtaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaagataatcataagtttgcac |
324 |
Q |
| |
|
||||||||| ||||||||| ||| || ||||||| || |||||||| || ||| ||| |||||||||||| |||||||| |||||||||| | ||| |
|
|
| T |
14991 |
aaacaaaatatatgcataatattttgcaacacaaacagaatccgaccctgaacagacatcttaaacaattcagccaaacaacataatcataaaatcgcat |
14892 |
T |
|
| Q |
325 |
agctctaatttagacccaacatacgcaagttaacaatttca |
365 |
Q |
| |
|
||||| |||| | |||| ||| |||||| |||||| ||||| |
|
|
| T |
14891 |
agctcgaattcaaaccctacacacgcaacttaacagtttca |
14851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 18405536 - 18405376
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18405536 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaaaaacaagtaaaacacagtcaacgtagacgcaaataggaaacttgttttacacatttcccttc |
18405437 |
T |
|
| Q |
101 |
cttattctatcattac-aagctcatttttaagttttttcaacttatgccctgttatgcaac |
160 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| | ||||||||||| ||| ||||||| |
|
|
| T |
18405436 |
cttattctatcattactaagcccatttttaagtttctgcaacttatgccatgtaatgcaac |
18405376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 154 - 380
Target Start/End: Complemental strand, 18404788 - 18404562
Alignment:
| Q |
154 |
atgcaacagagaaacaaacacaaaatgcagaaaaataaatcacaagtttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgtaa |
253 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| || |
|
|
| T |
18404788 |
atgcaacagagaaacaaacacaaaatgtagaaaaataaatcacaagtttgcacaaacaccacaaattgcagaaacaaaatatatgcataaaattctacaa |
18404689 |
T |
|
| Q |
254 |
cacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaagataatcataagtttgcacagctctaatttagacccaacatacgcaag |
353 |
Q |
| |
|
||||| || |||||||| || ||| ||| |||||||||||| | |||||| |||||||||| || ||||| || ||||| |||||| ||| | |||| |
|
|
| T |
18404688 |
cacaaacagaatccgaccctgcacacacatcttaaacaattcagcaaaacaacataatcataaattcgcacaactttaattcagaccctacacatgcaac |
18404589 |
T |
|
| Q |
354 |
ttaacaatttcagtcacttgcctacat |
380 |
Q |
| |
|
| |||| |||||| ||||||||||||| |
|
|
| T |
18404588 |
taaacagtttcaggcacttgcctacat |
18404562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 49551327 - 49551216
Alignment:
| Q |
1 |
tcaacaagtgttgtacctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacatttcccttc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49551327 |
tcaacaagtgttgtatctcgcacaaataaaaaccaaaacaacaagtaaaacacagtcaacatagccgcaaataggaaacttgttttacacattttccttc |
49551228 |
T |
|
| Q |
101 |
cttattctatca |
112 |
Q |
| |
|
|||||||||||| |
|
|
| T |
49551227 |
cttattctatca |
49551216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 125913 - 125999
Alignment:
| Q |
385 |
tccataagactaccaactccaccgagataaatccctaccatgtatccttttagaaatccttttctacataaatggtcgtacactaca |
471 |
Q |
| |
|
||||||||||| || || ||||| ||||||||| | ||||||||||||||| ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
125913 |
tccataagactttcatcttcaccgtgataaatccattccatgtatccttttacaaatcctttgctacataaatggtcgaacactaca |
125999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 235822 - 235876
Alignment:
| Q |
197 |
aagtttgcacaaacaccacaaattgtataaacaaaatttatgcataaaattctgt |
251 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
235822 |
aagttagcacaaacaacacaaattgcataaacaaaatttatgcataaaattctgt |
235876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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