View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9409_low_8 (Length: 459)
Name: NF9409_low_8
Description: NF9409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9409_low_8 |
 | |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 445
Target Start/End: Complemental strand, 5607975 - 5607551
Alignment:
| Q |
21 |
catgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcatgagaa |
120 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||| ||||| |||| ||||||| |||| |
|
|
| T |
5607975 |
catggaatcaattacacatgcaacaaacttctttgtaagttactaaaagaagatcttgatattgacactcccaaactaatatcatccatgatcagaagaa |
5607876 |
T |
|
| Q |
121 |
gactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctgg |
220 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5607875 |
gactcaaaagcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctgg |
5607776 |
T |
|
| Q |
221 |
tagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5607775 |
tagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctc |
5607676 |
T |
|
| Q |
321 |
agactttttagcttgaatgcttttgacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttag |
420 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5607675 |
agaatttttagcttgaatgcttttgacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttag |
5607576 |
T |
|
| Q |
421 |
ctttgaaagtattgggatcattact |
445 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5607575 |
ctttgaaagtattgggatcattact |
5607551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 445
Target Start/End: Original strand, 5627395 - 5627819
Alignment:
| Q |
21 |
catgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcatgagaa |
120 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||| ||||| |||| ||||||| |||| |
|
|
| T |
5627395 |
catggaatcaattacacatgcaacaaacttctttgtaagttactaaaagaagatcttgatattgacactcccaaactaatatcatccatgatcagaagaa |
5627494 |
T |
|
| Q |
121 |
gactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctgg |
220 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5627495 |
gactcaaaagcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctgg |
5627594 |
T |
|
| Q |
221 |
tagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5627595 |
tagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctc |
5627694 |
T |
|
| Q |
321 |
agactttttagcttgaatgcttttgacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttag |
420 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5627695 |
agaatttttagcttgaatgcttttgacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttag |
5627794 |
T |
|
| Q |
421 |
ctttgaaagtattgggatcattact |
445 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5627795 |
ctttgaaagtattgggatcattact |
5627819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 27 - 445
Target Start/End: Original strand, 5549960 - 5550378
Alignment:
| Q |
27 |
atcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcatgagaagactca |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||| ||||| |||| ||||||| |||||||||| |
|
|
| T |
5549960 |
atcaattacacatgcaacaaacttctttctaagttactaaaagaagatcttgatattgacactcccaaactaatatcatccatgatcagaagaagactca |
5550059 |
T |
|
| Q |
127 |
aacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctggtagtac |
226 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5550060 |
aaagcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctggtagtac |
5550159 |
T |
|
| Q |
227 |
agtcattgtgactactagggataaacatgtgctgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctcagactt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5550160 |
agtcattgtgactactagggataaacatgtgctgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctccgactt |
5550259 |
T |
|
| Q |
327 |
tttagcttgaatgcttttgacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttagctttga |
426 |
Q |
| |
|
||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5550260 |
ttttgtttgaatgcttttaacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttagctttac |
5550359 |
T |
|
| Q |
427 |
aagtattgggatcattact |
445 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5550360 |
aagtattgggatcattact |
5550378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 6310411 - 6309982
Alignment:
| Q |
16 |
agagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310411 |
agagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcat |
6310312 |
T |
|
| Q |
116 |
gagaagactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctagga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310311 |
gagaagactcaaacgcatgaaatctttcattgtaatagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctagga |
6310212 |
T |
|
| Q |
216 |
tctggtagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaatt |
315 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||| ||| | | ||| |||||||||||||||||||| |||| ||||| |
|
|
| T |
6310211 |
tctggtagcacagtcattgtgacgactagggataagcatgtcttgataagtggagggattgaaaaaatttatgaagttaagaagatgaattcccaaaatt |
6310112 |
T |
|
| Q |
316 |
ccctcagactttttagcttgaatgcttttgacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccc |
415 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || |
|
|
| T |
6310111 |
ccctccagcttttcagcttgaatgcttttggaaaagtctcacctaaggatggatatgtggagctctcaaaaagagcagttgattatgccaaaggaaatcc |
6310012 |
T |
|
| Q |
416 |
tttagctttgaaagtattgggatcattact |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6310011 |
tttagctttgaaagtattgggatcattact |
6309982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 21 - 445
Target Start/End: Original strand, 14404882 - 14405306
Alignment:
| Q |
21 |
catgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcatgagaa |
120 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| | | ||||| |||||||||| ||||||| |||| |
|
|
| T |
14404882 |
catggaatcaattacgcgtgcaacaaacttctttccaagttactaagggaagatcttgatattgacagtcccaaactaataccatctatgatcagaagaa |
14404981 |
T |
|
| Q |
121 |
gactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctgg |
220 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14404982 |
gactcaaaagcatgaaatctttcattgtactagatgatgtacataattcagaacttcttcaaaacttgattggagtgggacatggttggctaggatctgg |
14405081 |
T |
|
| Q |
221 |
tagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctc |
320 |
Q |
| |
|
||| |||||||| |||||||| |||||||| ||||||||||||||||||||||| | | ||| |||||||||||||||||||||||||| |||||| | |
|
|
| T |
14405082 |
tagcacagtcatcgtgactacgagggataagcatgtgctgataagtggaggaatcgacaaaatttatgaagttaagaagatgaactcccgcaattccgtt |
14405181 |
T |
|
| Q |
321 |
agactttttagcttgaatgcttttgacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttag |
420 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |
|
|
| T |
14405182 |
aagctttttagcatgaatgcttttgacaaagtctcgcctaaggatggatatgtggagctctcaaaaagagcagttgattatgccaacggaaacccgttag |
14405281 |
T |
|
| Q |
421 |
ctttgaaagtattgggatcattact |
445 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
14405282 |
ctttgaaagtattgggatctttact |
14405306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 441
Target Start/End: Original strand, 13165046 - 13165466
Alignment:
| Q |
21 |
catgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcatgagaa |
120 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||| |||||||||| ||||||| ||||| |
|
|
| T |
13165046 |
catggaatcaatgacacatgcaacaaacttctttccaagttactaggggaagaccttgatattaccactctcaaagtaataccatccatgatcaggagaa |
13165145 |
T |
|
| Q |
121 |
gactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctgg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||| |||||||||||| ||||| |||| |
|
|
| T |
13165146 |
gactcaaacgcatgaaatctttcattgtactagatgacgtacatacctcggaacttctacaaaacttgattggagtgggacatggttggttaggagctgg |
13165245 |
T |
|
| Q |
221 |
tagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaatt-aagacaatatatgaagttaagaagatgaactcccgaaattccct |
319 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13165246 |
tagcacagtcattgtgacgactagggataagcatgtgctgataagtggaggaattgaaga-aatttatgaagttaagaagatgaactcccaaaattccct |
13165344 |
T |
|
| Q |
320 |
cagactttttagcttgaatgcttttgacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaacccttta |
419 |
Q |
| |
|
| ||||| |||||||||||||||||| |||| |||||||| |||| ||||||||||||||||||||| |||||||| |||| ||| | ||||||| |
|
|
| T |
13165345 |
ccagcttttctgcttgaatgcttttgacactgtcttccctaaggagggatttgtggagctctcaaaaagagcgattgattacgccaaaggcatcccttta |
13165444 |
T |
|
| Q |
420 |
gctttgaaagtattgggatcat |
441 |
Q |
| |
|
||| ||||||| |||||||||| |
|
|
| T |
13165445 |
gctctgaaagttttgggatcat |
13165466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 21 - 442
Target Start/End: Original strand, 32633432 - 32633853
Alignment:
| Q |
21 |
catgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcatgagaa |
120 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||| |||||||| |||||||||||||||||||| || ||||| |||||||||| ||||||||||||| |
|
|
| T |
32633432 |
catggaatcaatttcatatgcaacaaacttctttctaagttactaagggaagatcttgatattgaatctgccaaagtaataccatccatgatcatgagaa |
32633531 |
T |
|
| Q |
121 |
gactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctgg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| || |||||||||||||| ||| |
|
|
| T |
32633532 |
gactcaaacgcatgaaatctttcattgtactagatgatgttcatactttggaacttctgcaaaacttgattggagtcgggaatggttggctaggagatgg |
32633631 |
T |
|
| Q |
221 |
tagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctc |
320 |
Q |
| |
|
||| | ||||||||| || || |||||||| ||||||||| | |||||||||||| | | ||| || ||||||| | |||||||| ||||| |||||| |
|
|
| T |
32633632 |
tagcatagtcattgtaacgacaagggataagcatgtgctggttagtggaggaattgacaaaattcatcaagttaaagaaatgaactctcgaaactccctc |
32633731 |
T |
|
| Q |
321 |
agactttttagcttgaatgcttttgacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttag |
420 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| |||||||| |||| ||| |||||||||| |
|
|
| T |
32633732 |
cagcttttcagcttcaatgcttttgacaaagtcttacctaaggagggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttag |
32633831 |
T |
|
| Q |
421 |
ctttgaaagtattgggatcatt |
442 |
Q |
| |
|
|| | ||||| ||||||||||| |
|
|
| T |
32633832 |
ctctaaaagttttgggatcatt |
32633853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 21 - 332
Target Start/End: Original strand, 5571537 - 5571848
Alignment:
| Q |
21 |
catgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcatgagaa |
120 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| ||| ||||| |||| ||| | ||||||| ||||| |
|
|
| T |
5571537 |
catggaatcaattacacgtgcaacaaacttctttccaagttactaggggaagatcttcgtattgacactcccaaagtaatcccagccatgatcaagagaa |
5571636 |
T |
|
| Q |
121 |
gactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctgg |
220 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||| ||| |||| |
|
|
| T |
5571637 |
gactcagacatatgaaatctttcattgtattagatgatgtacataactctgaacttctgcaagacttgattggagtgagaggtggttggcttggacctgg |
5571736 |
T |
|
| Q |
221 |
tagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctc |
320 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5571737 |
tagcatagtcattgtgacgactagggataaacatgtgctgataagtggaggaattgacgaaatttatgaagttaagaagatgaactcccaaaattccctc |
5571836 |
T |
|
| Q |
321 |
agactttttagc |
332 |
Q |
| |
|
|||||||||| |
|
|
| T |
5571837 |
caactttttagc |
5571848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 12177243 - 12176984
Alignment:
| Q |
16 |
agagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcat |
115 |
Q |
| |
|
||||||||||| ||| |||||||| ||||| ||||||||| |||||||| ||||||||||| ||||||| ||| | ||| ||||| |||| ||| | || |
|
|
| T |
12177243 |
agagacatgggctcagttacacatacaacagacttctttctaagttactaggggaagatcttcatattgagactcctaaagtaatatcatctatggttat |
12177144 |
T |
|
| Q |
116 |
gagaagactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctagga |
215 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||| | || || ||||||||| | || |||||||||| ||| |||| ||| || ||| |
|
|
| T |
12177143 |
gaaaagactcaaacgcatgaaagctttcattgtactagatgatgttcgtactttagaacttctagataatttgattggagcagggcatgattgccttgga |
12177044 |
T |
|
| Q |
216 |
tctggtagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaatt |
275 |
Q |
| |
|
|||||| | |||||||||||| || || ||||| |||||| ||| | | ||||||||| |
|
|
| T |
12177043 |
gttggtagcagagtcattgtgacaaccagagataagcatgtgttgacaggaggaggaatt |
12176984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 12421671 - 12421412
Alignment:
| Q |
16 |
agagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcat |
115 |
Q |
| |
|
||||||||||| ||| |||||||| ||||| ||||||||| |||||||| ||||||||||| ||||||| ||| | ||| ||||| |||| ||| | || |
|
|
| T |
12421671 |
agagacatgggctcagttacacatacaacagacttctttctaagttactaggggaagatcttcatattgagactcctaaagtaatatcatctatggttat |
12421572 |
T |
|
| Q |
116 |
gagaagactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctagga |
215 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||| | || || ||||||||| | || |||||||||| ||| |||| ||| || ||| |
|
|
| T |
12421571 |
gaaaagactcaaacgcatgaaagctttcattgtactagatgatgttcgtactttagaacttctagataatttgattggagcagggcatgattgccttgga |
12421472 |
T |
|
| Q |
216 |
tctggtagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaatt |
275 |
Q |
| |
|
|||||| | |||||||||||| || || ||||| |||||| ||| | | ||||||||| |
|
|
| T |
12421471 |
gttggtagcagagtcattgtgacaaccagagataagcatgtgttgacaggaggaggaatt |
12421412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 12188564 - 12188342
Alignment:
| Q |
16 |
agagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcat |
115 |
Q |
| |
|
||||||||||| ||| |||||||| ||||| ||||||||| ||| |||| ||||||||||| ||||||| ||| | ||| ||||| |||| ||| | || |
|
|
| T |
12188564 |
agagacatgggctcagttacacatacaacagacttctttctaagctactaggggaagatcttcatattgagactcctaaagtaatatcatctatggttat |
12188465 |
T |
|
| Q |
116 |
gagaagactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctagga |
215 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||| | || || ||||||||| | || |||||||||| ||| |||| ||| || ||| |
|
|
| T |
12188464 |
gaaaagactcaaacgcatgaaagctttcattgtactagatgatgttcgtattttagaacttctaaataatttgattggagcagggcatgattgccttgga |
12188365 |
T |
|
| Q |
216 |
tctggtagtacagtcattgtgac |
238 |
Q |
| |
|
||||||| | |||||||||||| |
|
|
| T |
12188364 |
gctggtagcagagtcattgtgac |
12188342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 12432992 - 12432770
Alignment:
| Q |
16 |
agagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcat |
115 |
Q |
| |
|
||||||||||| ||| |||||||| ||||| ||||||||| ||| |||| ||||||||||| ||||||| ||| | ||| ||||| |||| ||| | || |
|
|
| T |
12432992 |
agagacatgggctcagttacacatacaacagacttctttctaagctactaggggaagatcttcatattgagactcctaaagtaatatcatctatggttat |
12432893 |
T |
|
| Q |
116 |
gagaagactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctagga |
215 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||| | || || ||||||||| | || |||||||||| ||| |||| ||| || ||| |
|
|
| T |
12432892 |
gaaaagactcaaacgcatgaaagctttcattgtactagatgatgttcgtattttagaacttctaaataatttgattggagcagggcatgattgccttgga |
12432793 |
T |
|
| Q |
216 |
tctggtagtacagtcattgtgac |
238 |
Q |
| |
|
||||||| | |||||||||||| |
|
|
| T |
12432792 |
gctggtagcagagtcattgtgac |
12432770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 263
Target Start/End: Complemental strand, 9394357 - 9394162
Alignment:
| Q |
68 |
ggaagatcttgatattgatacttccaaattaataccatcaatgatcatgagaagactcaaacgcatgaaatctttcattgtactagatgatgtacataat |
167 |
Q |
| |
|
||||||||||| |||||| ||| ||||| ||||| |||| ||| | ||| ||||||||||| ||||||| |||||||||||||||| || | |||| | |
|
|
| T |
9394357 |
ggaagatcttggtattgacactcccaaagtaatatcatctatggttatgtaaagactcaaacacatgaaagctttcattgtactagacgacattcatact |
9394258 |
T |
|
| Q |
168 |
tcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctggtagtacagtcattgtgactactagggataaacatgtgctgata |
263 |
Q |
| |
|
| | ||||||| |||| |||||||||||||| |||| ||| || ||| ||||||| | || |||||||| || || ||||| |||||| ||||| |
|
|
| T |
9394257 |
ttaaaacttctagaaaatttgattggagtagggcatgattgccttggagctggtagcagagaaattgtgacaaccagagataagcatgtgttgata |
9394162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 5649855 - 5649914
Alignment:
| Q |
117 |
agaagactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaactt |
176 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
5649855 |
agaagactcaaaagcataaaagctttcattgtattagatgatgtacgtacttcagaactt |
5649914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 5603323 - 5603257
Alignment:
| Q |
110 |
gatcatgagaagactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaactt |
176 |
Q |
| |
|
|||||| |||||||||||| |||| ||| ||||| ||||| |||||||||||| || |||||||||| |
|
|
| T |
5603323 |
gatcataagaagactcaaaagcataaaagctttcgttgtattagatgatgtacgtacttcagaactt |
5603257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 5632047 - 5632113
Alignment:
| Q |
110 |
gatcatgagaagactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaactt |
176 |
Q |
| |
|
|||||| |||||||||||| |||| ||| ||||| ||||| |||||||||||| || |||||||||| |
|
|
| T |
5632047 |
gatcataagaagactcaaaagcataaaagctttcgttgtattagatgatgtacgtacttcagaactt |
5632113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 21 - 445
Target Start/End: Complemental strand, 13971 - 13547
Alignment:
| Q |
21 |
catgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaataccatcaatgatcatgagaa |
120 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| | | ||||| |||||||||| ||||||| |||| |
|
|
| T |
13971 |
catggaatcaattacgcgtgcaacaaacttctttccaagttactaagggaagatcttgatattgacagtcccaaactaataccatctatgatcagaagaa |
13872 |
T |
|
| Q |
121 |
gactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctgg |
220 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13871 |
gactcaaaagcatgaaatctttcattgtactagatgatgtacataattcagaacttcttcaaaacttgattggagtgggacatggttggctaggatctgg |
13772 |
T |
|
| Q |
221 |
tagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctc |
320 |
Q |
| |
|
||| |||||||| |||||||| |||||||| ||||||||||||||||||||||| | | ||| |||||||||||||||||||||||||| |||||| | |
|
|
| T |
13771 |
tagcacagtcatcgtgactacgagggataagcatgtgctgataagtggaggaatcgacaaaatttatgaagttaagaagatgaactcccgcaattccgtt |
13672 |
T |
|
| Q |
321 |
agactttttagcttgaatgcttttgacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttag |
420 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |
|
|
| T |
13671 |
aagctttttagcatgaatgcttttgacaaagtctcgcctaaggatggatatgtggagctctcaaaaagagcagttgattatgccaacggaaacccgttag |
13572 |
T |
|
| Q |
421 |
ctttgaaagtattgggatcattact |
445 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
13571 |
ctttgaaagtattgggatctttact |
13547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 276
Target Start/End: Complemental strand, 19492877 - 19492704
Alignment:
| Q |
103 |
catcaatgatcatgagaagactcaaacgcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggaca |
202 |
Q |
| |
|
|||| ||| |||| |||||||||||| | |||||| |||||||||||||||||||||| | || | ||||| |||| ||| |||||| ||| || |
|
|
| T |
19492877 |
catccatggtcattagaagactcaaaggaatgaaagctttcattgtactagatgatgttcgtagtccagaaactctgaaaactttgattagagagagagg |
19492778 |
T |
|
| Q |
203 |
tggttggctaggatctggtagtacagtcattgtgactactagggataaacatgtgctgataagtggaggaatta |
276 |
Q |
| |
|
||||||||||||| ||||||| | |||||||||||||||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
19492777 |
tggttggctaggagctggtagcatagtcattgtgactactagggatgaggatgtgctgaaaagtggaggaatta |
19492704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University