View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9410_high_15 (Length: 302)
Name: NF9410_high_15
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9410_high_15 |
 | |
|
| [»] chr7 (10 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 39179099 - 39179390
Alignment:
| Q |
11 |
caaaggtcaaatatcttccaagataggcatcagctatgtaagctcctgcaagtggcatcatccacactgcaccccccaagttgcttatgttgtttgatga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39179099 |
caaaggtcaaatatcttccaagataggcatcagctatgtaggctcctgcaagtggcatcatccacactgcaccccccaagttgcttatgttgtttgatga |
39179198 |
T |
|
| Q |
111 |
ctccacagtaccctcgtgaagtttacttgttagatacaccactaagtttgatgctattccatagaaagccatcctttcaaacacttcatacactataaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39179199 |
ctccacagtaccctcgtgaagtttacttgttagatacaccactaagtttgatgctattccatagaaagccatcctttcaaacacttcatacactataaat |
39179298 |
T |
|
| Q |
211 |
tacacaaatgtatacaccatattcgtaagtgttattaatgcattatactgaaactagaataacgtaacaagcttcaaagtgttattatggca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39179299 |
tacacaaatgtatacaccatattcgtaagtgttattaatgcattatactgaaactagaataacgtaacaagcttcaaagtgttattatggca |
39179390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 88 - 257
Target Start/End: Original strand, 39191797 - 39191966
Alignment:
| Q |
88 |
aagttgcttatgttgtttgatgactccacagtaccctcgtgaagtttacttgttagatacaccactaagtttgatgctattccatagaaagccatccttt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
39191797 |
aagttgcttatgttgtttgatgactccacagtaccctcgtgaagtttacttgttagatacaccactaagtttgatgatattccgtagaaagccatccttt |
39191896 |
T |
|
| Q |
188 |
caaacacttcatacactataaattacacaaatgtatacaccatattcgtaagtgttattaatgcattata |
257 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
39191897 |
ccaacacttcatacattataaattacacaaatgcttacgccatattcataagtgttattgatgcattata |
39191966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 141 - 257
Target Start/End: Original strand, 39220741 - 39220857
Alignment:
| Q |
141 |
tagatacaccactaagtttgatgctattccatagaaagccatcctttcaaacacttcatacactataaattacacaaatgtatacaccatattcgtaagt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
39220741 |
tagatacaccactaagtttgatgctattccatagaaagctatcctttcaaacacttcgtacactataaattacacaaatgcatacgccatattcataagt |
39220840 |
T |
|
| Q |
241 |
gttattaatgcattata |
257 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
39220841 |
gttattaatgcattata |
39220857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 218
Target Start/End: Original strand, 39196195 - 39196385
Alignment:
| Q |
28 |
ccaagataggcatcagctatgtaagctcctgcaagtggcatcatccacactgcaccccccaagttgcttatgttgtttgatgactccacagtaccctcgt |
127 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||| ||||||||||||||||||| | |||| || ||||||| | |||||||| || |||||||| ||||| | |
|
|
| T |
39196195 |
ccaaaataagcatcggctatgtaagctcctacaagtggcatcatccacaccgaacccgcccagttgctaacgttgtttgcagattccacagttccctcat |
39196294 |
T |
|
| Q |
128 |
gaagtttacttgttagatacaccactaagtttgatgctattccatagaaagccatcctttcaaacacttcatacactataaattacacaaa |
218 |
Q |
| |
|
| || ||| |||||||||| | |||||||||||||||||| || ||| |||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
39196295 |
ggagcttatttgttagatagatcactaagtttgatgctatcccgtagtaagccatcctctcaaacacttcataccctataaattacacaaa |
39196385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 39240386 - 39240591
Alignment:
| Q |
11 |
caaaggtcaaatatcttccaagataggcatcagctatgtaagctcctgcaagtggcatcatccacactgcaccccccaagttgcttatgttgtttgatga |
110 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||| ||| |||| || ||| | ||||| || |||||||| || |
|
|
| T |
39240386 |
caaaggtccaatatcggccaagataagcatcagctacataagctcctgcaagtggcatcaaccaaactgatcctccccaattgctaatattgtttgaaga |
39240485 |
T |
|
| Q |
111 |
ctccacagtaccctcgtgaagtttacttgttagatacaccactaagtttgatgctattccatagaaagccatcctttcaaacacttcatacactataaat |
210 |
Q |
| |
|
||||||||||||| || || || ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |||||| |||||||| |
|
|
| T |
39240486 |
ttccacagtaccctgatggagcttttttgttagatacaccactaagtttgatgatattccatagtaagccatcctctcaaacaattcataacctataaat |
39240585 |
T |
|
| Q |
211 |
tacaca |
216 |
Q |
| |
|
|||||| |
|
|
| T |
39240586 |
tacaca |
39240591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 39224886 - 39225093
Alignment:
| Q |
11 |
caaaggtcaaatatcttccaagataggcatcagctatgtaagctcctgcaagtggcatcatccacactgcaccccccaagttgcttatgttgtttgatga |
110 |
Q |
| |
|
|||||||| |||| | |||| ||| ||||| || |||||||||||| ||||||||||||||||||| | ||| || ||||||| | ||||||||| | |
|
|
| T |
39224886 |
caaaggtccaatagcggccaaaataagcatcggcaatgtaagctcctacaagtggcatcatccacaccgaacctgcccagttgctaacgttgtttgaagc |
39224985 |
T |
|
| Q |
111 |
ctccacagtaccctcgtgaagtttacttgttagatacaccactaagtttgatgctattccatagaaagccatcctttcaaacacttcatacactataaat |
210 |
Q |
| |
|
||||||||||||| ||||| || |||||||||| | |||||||||||||||||| || ||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
39224986 |
ttccacagtaccctgatgaagcttgtttgttagataaatcactaagtttgatgctatcccgtagtaagccatcctctcaaacacttcataccctataaat |
39225085 |
T |
|
| Q |
211 |
tacacaaa |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
39225086 |
tacacaaa |
39225093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 39257962 - 39258162
Alignment:
| Q |
11 |
caaaggtcaaatatcttccaagataggcatcagctatgtaagctcctgcaagtggcatcatccacactgcaccccccaagttgcttatgttgtttgatga |
110 |
Q |
| |
|
|||||||| | |||| |||||||| |||||||||| |||||||||| |||||||||||||||| |||| |||| || | ||||| | ||||||||| || |
|
|
| T |
39257962 |
caaaggtccagtatcgaccaagatatgcatcagctacgtaagctcctacaagtggcatcatccaaactgaacccgcccaattgctaacgttgtttgaaga |
39258061 |
T |
|
| Q |
111 |
ctccacagtaccctcgtgaagtttacttgttagatacaccactaagtttgatgctattccatagaaagccatcctttcaaacacttcatacactataaat |
210 |
Q |
| |
|
|||||||||||||| ||| | | | |||| | |||||||||||||||||| ||||| ||| || |||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
39258062 |
ttccacagtaccctcatgatgctgatttgtcaaatacaccactaagtttgaagctatcccaaagtaagccatcctctcaaacatttcataccctataaat |
39258161 |
T |
|
| Q |
211 |
t |
211 |
Q |
| |
|
| |
|
|
| T |
39258162 |
t |
39258162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 39217814 - 39217995
Alignment:
| Q |
37 |
gcatcagctatgtaagctcctgcaagtggcatcatccacactgcaccccccaagttgcttatgttgtttgatgactccacagtaccctcgtgaagtttac |
136 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||| ||| | ||||||| | |||||||| || |||||||| ||||| || || || |
|
|
| T |
39217814 |
gcatcggctatgtaagctcctacaagtggcatcatccacaccaaccccttccagttgctaacgttgtttgcagattccacagttccctcatggagcttgt |
39217913 |
T |
|
| Q |
137 |
ttgttagatacaccactaagtttgatgctattccatagaaagccatcctttcaaacacttcatacactataaattacacaaa |
218 |
Q |
| |
|
||||||||| | |||||||||||||||||| || ||| |||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
39217914 |
ctgttagatagatcactaagtttgatgctatcccgtagtaagccatcctctcaaacacttcataccctataaattacacaaa |
39217995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 39191713 - 39191776
Alignment:
| Q |
41 |
cagctatgtaagctcctgcaagtggcatcatccacactgcaccccccaagttgcttatgttgttt |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||| |
|
|
| T |
39191713 |
cagctatgtaagctcttgcaagtggcatcatcgacactg-aacccccaagttgcttatgttgttt |
39191776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 39261882 - 39261968
Alignment:
| Q |
115 |
acagtaccctcgtgaagtttacttgttagatacaccactaagtttgatgctattccatagaaagccatcctttcaaacacttcatac |
201 |
Q |
| |
|
||||||||||| || || || |||||||||||| ||||| ||||||||||| |||||| | ||||||||||||| || ||||||| |
|
|
| T |
39261882 |
acagtaccctcatggagcttctttgttagatacaacactagatttgatgctatcccatagtatgccatcctttcaatcatttcatac |
39261968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 32468602 - 32468555
Alignment:
| Q |
154 |
aagtttgatgctattccatagaaagccatcctttcaaacacttcatac |
201 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
32468602 |
aagtttgatgcaactccatagaaagccatcctttcaaatgcttcatac |
32468555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University