View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9410_high_19 (Length: 260)
Name: NF9410_high_19
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9410_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 38128591 - 38128348
Alignment:
| Q |
1 |
aaacatttcacaatacttaataattctggtgcaatacatgtctgcagcaatatcagcaataattgnnnnnnnn-aaggtttacactttgattctgtatct |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38128591 |
aaacatttcacaatacttaataattctggtgcaatacatgtctgcagcaatatcagcaataattgtatttttttaaggtttacactttgattctgtatct |
38128492 |
T |
|
| Q |
100 |
ggagatgtgactctcatcaacacaactcaatctggttaggtacataagagaagataaactgaacatgatttttaaatgttgagggtatctcaagattctt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128491 |
ggagatgtgactctcatcaacacaactcaatctggttaggtacataagagaagataaactgaacatgatttttaaatgttgagggtatctcaagattctt |
38128392 |
T |
|
| Q |
200 |
ttttaaatcatgtagtcatttattttatttgagggagatgatac |
243 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38128391 |
ttttaaagcatgtagtcatttattttatttgagggagatgatac |
38128348 |
T |
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