View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9410_high_2 (Length: 766)
Name: NF9410_high_2
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9410_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 604
Target Start/End: Original strand, 28697724 - 28698309
Alignment:
| Q |
20 |
gacactcctttattcatttgttcccatatggcatcaacttgtgcttttacttctgtaacatcctattttggttccaggctttccc-tggaacaggttctt |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||| || ||||||||||| |
|
|
| T |
28697724 |
gacactcctttgttcatttgttcccatatggcatcaacttgtgcttttacttcagtaacatcctgttttagttccaggatttcccctgaaacaggttctt |
28697823 |
T |
|
| Q |
119 |
tgacagattttgcagagtttccattgattgtatcgacggaactcatcactcccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28697824 |
tgacagattttgcagagtttccattgattgtatcgacggaactcatcactcccgcaacgttcacgatagatggatggtggaggaacgcaacaccaacctg |
28697923 |
T |
|
| Q |
219 |
aatccttccttccttgtgtacaacaacatgtttttcctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccatttctatgttg |
318 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28697924 |
aatccttccatccttgggtacaacaacatgttgttcctcatttatcaaatccaaggaaaagctcttgcctttcatttgaacattgaccatttctatgttg |
28698023 |
T |
|
| Q |
319 |
cttgcatctttaatcacacatttgttttacgcaaacaaccctctataaacattctctagcagttgtgtaacactcaaaagattttcattaattttatgaa |
418 |
Q |
| |
|
|||||||||||||||||||||| || | | |||||||| | ||||| |||||||||||||||| |||||||||||||| || | |||||||||| ||| |
|
|
| T |
28698024 |
tttgcatctttaatcacacattttttatcctcaaacaactccttataaccattctctagcagttgagtaacactcaaaaggttatgattaattttaggaa |
28698123 |
T |
|
| Q |
419 |
catataagacatcagaaattagtttcaaacctaaaaggctttcaattgcaaccgttaccttgccttttacttcgataagtgcgccatttccaattctgac |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||| || |||||||||||||||| |
|
|
| T |
28698124 |
catataagacatcagaaattagtttcaaacctgaaaggctttcaattgcaactgttcccttgccttttacttcaataagtacgtcatttccaattctgac |
28698223 |
T |
|
| Q |
519 |
tttggaaatagttgtctccttcggatcattaaagagctcatgatcataagtcatgtggtttgtgcaaccaatatctataagccaac |
604 |
Q |
| |
|
||||||||||||||||| | | ||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
28698224 |
tttggaaatagttgtcttgtccaaatctttaaagagctcacgatcataagtcatgtggtttgtgcaaccactatctatgagccaac |
28698309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 611 - 750
Target Start/End: Original strand, 28698405 - 28698545
Alignment:
| Q |
611 |
gccttgcatattctttccacatgtcctaactgaccacacttgtgacattttacttttggtctccaccaatatctgtttggtggatggtta-nnnnnnnng |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| | |
|
|
| T |
28698405 |
gccttgcatattctttccacatgtcctaactgaccacacttgtgacattttacgtctggtctccaccaacatctgtttggtggatggttatttttttttg |
28698504 |
T |
|
| Q |
710 |
cagtatggacagggtgaaaagagacttgtattgcttctctg |
750 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
28698505 |
cagaatggacaaggtgaaaagagacttgtattgctgctctg |
28698545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 604
Target Start/End: Complemental strand, 627865 - 627280
Alignment:
| Q |
20 |
gacactcctttattcatttgttcccatatggcatcaacttgtgcttttacttctgtaacatcctattttggttccaggctttccc-tggaacaggttctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||| |||||| || ||||||||||| |
|
|
| T |
627865 |
gacactcctttattcatttgttcccatatggcatcaacttgtgcttttacttcagtaacatcctgttttagtttcaggatttcccctgaaacaggttctt |
627766 |
T |
|
| Q |
119 |
tgacagattttgcagagtttccattgattgtatcgacggaactcatcactcccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttg |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | |||||||||||||||| || |||||||||||||||||||||||| ||| ||||||||||| || |
|
|
| T |
627765 |
tgacagattttgtagagtttccattgattgtatccatggaactcatcactcccgcagcgttcacgatagatggatggtggaagaatgcaacaccaacctg |
627666 |
T |
|
| Q |
219 |
aatccttccttccttgtgtacaacaacatgtttttcctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccatttctatgttg |
318 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
627665 |
aatccttccttccttatgtacagcaacatgttgttcctcattcatcaaatccaaggaaaagctcttgcatttcatttgaacattgaccatttctatattg |
627566 |
T |
|
| Q |
319 |
cttgcatctttaatcacacatttgttttacgcaaacaaccctctataaacattctctagcagttgtgtaacactcaaaagattttcattaattttatgaa |
418 |
Q |
| |
|
|||||||| ||||||||||||| || | | |||||||| | ||||| |||||||||||||||| |||||||||||||| |||| |||||||||| || |
|
|
| T |
627565 |
tttgcatctgtaatcacacattttttatcctcaaacaacaccttataaccattctctagcagttgagtaacactcaaaaggttttgattaattttagaaa |
627466 |
T |
|
| Q |
419 |
catataagacatcagaaattagtttcaaacctaaaaggctttcaattgcaaccgttaccttgccttttacttcgataagtgcgccatttccaattctgac |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
627465 |
catataagacatcagaaattagtttcaaacctgaaaggcattcaattgcaactgttcccttgccttttacttcaataagtacgccatttccaattctgac |
627366 |
T |
|
| Q |
519 |
tttggaaatagttgtctccttcggatcattaaagagctcatgatcataagtcatgtggtttgtgcaaccaatatctataagccaac |
604 |
Q |
| |
|
| |||||||||||||||| | | ||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
627365 |
tctggaaatagttgtctcgtccaaatctttatagagctcacgatcataagtcatgtggtttgtgcaaccactatctatgagccaac |
627280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 611 - 750
Target Start/End: Complemental strand, 627184 - 627042
Alignment:
| Q |
611 |
gccttgcatattctttccacatgtcctaactgaccacacttgtgacattttacttttggtctccaccaatatctgtttggtggatggtta---nnnnnnn |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
627184 |
gccttgcatattctttccacatgtcctaactggccacacttgtgacattttacgtctggtctccaccaacatctgtttggtggatggttatttttttttt |
627085 |
T |
|
| Q |
708 |
ngcagtatggacagggtgaaaagagacttgtattgcttctctg |
750 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
627084 |
tgcagtatggatagggtgaaaagagacttatattgctgctctg |
627042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 33716221 - 33716568
Alignment:
| Q |
20 |
gacactcctttattcatttgttcccatatggcatcaacttgtgcttttacttctgtaacatcctattttggttccaggctttccc-tggaacaggttctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
33716221 |
gacactcctttattcatttgttcccatatggcatcaacttgtgcttttacttctgtaacatcctattttgattccaggctttcccctggaacaggttctt |
33716320 |
T |
|
| Q |
119 |
tgacagattttgcagagtttccattgattgtatcgacggaactcatcactcccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33716321 |
tgacagattttgcagagtttccattgattgtatcgacggaactcatcactcccgcaacgttcacaatagatggatggtggaggaacgcaacaccaacttg |
33716420 |
T |
|
| Q |
219 |
aatccttccttccttgtgtacaacaacatgtttttcctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccatttctatgttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33716421 |
aatccttccttccttgtgtacaacaacatgttgttcctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccatttgtatgttg |
33716520 |
T |
|
| Q |
319 |
cttgcatctttaatcacacatttgttttacgcaaacaaccctctataa |
366 |
Q |
| |
|
|||||||||||||||||||||| || | | |||||||| || ||||| |
|
|
| T |
33716521 |
tttgcatctttaatcacacattttttatcctcaaacaacactttataa |
33716568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 363 - 604
Target Start/End: Original strand, 33720856 - 33721097
Alignment:
| Q |
363 |
ataaacattctctagcagttgtgtaacactcaaaagattttcattaattttatgaacatataagacatcagaaattagtttcaaacctaaaaggctttca |
462 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33720856 |
ataaccattctctagcggttgagtaacactcaaaaggttttgattaattttaggaacatataagacatcagaaattagtttcaaacctaaaaggctttca |
33720955 |
T |
|
| Q |
463 |
attgcaaccgttaccttgccttttacttcgataagtgcgccatttccaattctgactttggaaatagttgtctccttcggatcattaaagagctcatgat |
562 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
33720956 |
attgcaaccgttcccttgccttttacttcgataagtgcgccatttccaattctgactttggaaatagttgtctcgtccggatcattaaagagctcatgat |
33721055 |
T |
|
| Q |
563 |
cataagtcatgtggtttgtgcaaccaatatctataagccaac |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33721056 |
cataagtcatgtggtttgtgcaaccaatatctataagccaac |
33721097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 611 - 750
Target Start/End: Original strand, 33721193 - 33721332
Alignment:
| Q |
611 |
gccttgcatattctttccacatgtcctaactgaccacacttgtgacattttacttttggtctccaccaatatctgtttggtggatggttannnnnnnngc |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
33721193 |
gccttgcatattctttccacatgtcctaactgacaacacttctgacattttacgtttggtctccaccaatatctgttttgtggatggttattttttttgc |
33721292 |
T |
|
| Q |
711 |
agtatggacagggtgaaaagagacttgtattgcttctctg |
750 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33721293 |
agtatggacagggtgaaaagagacttgtattgcttctctg |
33721332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 27711629 - 27711514
Alignment:
| Q |
26 |
cctttattcatttgttcccatatggcatcaacttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacag |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
27711629 |
cctttattcatttgttcccatatggcatcaacttgtgcttttacttcagtaacatcctgttttggttccaggatttcccctggaacatgttctttgacag |
27711530 |
T |
|
| Q |
125 |
attttgcagagtttcc |
140 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27711529 |
attttgcagagtttcc |
27711514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 50793815 - 50793736
Alignment:
| Q |
74 |
gtaacatcctattttggttccaggctt-tccctggaacaggttctttgacagattttgcagagtttccattgattgtatc |
152 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50793815 |
gtaacatcctgttttggttccaggcttgtccctggaacaggttctttgacagattttgcagaatttccattgattgtatc |
50793736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 50793948 - 50793895
Alignment:
| Q |
20 |
gacactcctttattcatttgttcccatatggcatcaacttgtgcttttacttct |
73 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50793948 |
gacacacctttattcatttgttcccatatggcatcaacttcagcttttacttct |
50793895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University