View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9410_high_9 (Length: 372)

Name: NF9410_high_9
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9410_high_9
NF9410_high_9
[»] chr1 (3 HSPs)
chr1 (1-366)||(2569146-2569519)
chr1 (10-62)||(46435465-46435517)
chr1 (2-39)||(8462239-8462276)
[»] chr5 (5 HSPs)
chr5 (13-62)||(11607534-11607583)
chr5 (1-62)||(33858538-33858599)
chr5 (9-62)||(19357262-19357315)
chr5 (4-62)||(33271727-33271785)
chr5 (13-58)||(1826381-1826426)
[»] chr3 (5 HSPs)
chr3 (1-58)||(44380364-44380421)
chr3 (1-62)||(37742835-37742896)
chr3 (10-62)||(19619217-19619269)
chr3 (13-65)||(33509802-33509854)
chr3 (9-60)||(35094666-35094717)
[»] chr2 (6 HSPs)
chr2 (1-62)||(21606149-21606210)
chr2 (1-62)||(37357917-37357978)
chr2 (9-58)||(4779703-4779752)
chr2 (13-62)||(23863803-23863852)
chr2 (1-62)||(25275622-25275683)
chr2 (13-62)||(34392081-34392130)
[»] chr7 (6 HSPs)
chr7 (6-62)||(48250271-48250327)
chr7 (1-62)||(48072497-48072558)
chr7 (1-47)||(35341646-35341692)
chr7 (1-62)||(31306868-31306929)
chr7 (1-62)||(32694570-32694631)
chr7 (1-46)||(40856955-40857000)
[»] chr6 (4 HSPs)
chr6 (10-62)||(5403876-5403928)
chr6 (18-62)||(10503259-10503303)
chr6 (1-58)||(1211848-1211905)
chr6 (1-62)||(32644838-32644898)
[»] chr8 (3 HSPs)
chr8 (13-62)||(24337830-24337879)
chr8 (1-62)||(11254028-11254089)
chr8 (13-58)||(41179567-41179612)
[»] chr4 (8 HSPs)
chr4 (1-58)||(51812024-51812081)
chr4 (1-58)||(35869575-35869632)
chr4 (1-62)||(55590581-55590642)
chr4 (10-62)||(12473823-12473875)
chr4 (10-62)||(12528232-12528284)
chr4 (3-58)||(35781021-35781076)
chr4 (20-58)||(1796679-1796717)
chr4 (1-54)||(22343447-22343500)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-62)||(13005-13066)
[»] scaffold0519 (1 HSPs)
scaffold0519 (1-62)||(11304-11365)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 2569146 - 2569519
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctatttgtcagcgtactttggatgttggaac----------g 90  Q
    ||||||||||| |||||||||||| | |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||          |    
T  2569146 tgtgccatgtggcacattctaattaggcaatagtatatatcattatgttacacaagtgctatccgtcagcgtactttggatgttggaacttaatttgatg 2569245  T
Q  91 tctttgcatgctcttgcttgactcatnnnnnnnntaatattggtatttatataaaaaaggcaaaagagaaaccaattaataattagataagagaacaaaa 190  Q
    ||||||||||||||||||| ||||||         |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2569246 tctttgcatgctcttgcttcactcataaaaaaaaaaatagtggtatttatagaaaaaaggcaaaagagaaaccaattaataattagataagagaacaaaa 2569345  T
Q  191 atcacact--ggtttccaattatattacatgatgttatcataaaggaatctcctagagagtttctttaaaataaaaaatctccttgagagttggtcacta 288  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2569346 atcacactatggtttccaattatattacatgatgttatcataaaggaatctcctagagagtttctttaaaagaaaaaatctccttgagagttggtcacta 2569445  T
Q  289 taattaacttttacaatttattgtactaatttgaattcactcttttatatttgtgcatatttcttaacaaactccaaa 366  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||    
T  2569446 taattaacttttacaatttattgtactaatt---attcactcttttatatttgtgcat-tttcttaacaaactccaaa 2569519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 46435517 - 46435465
Alignment:
Q  10 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  46435517 tgacacattctaattgggcaatggtatataccattatggtacacaagtcctat 46435465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 8462239 - 8462276
Alignment:
Q  2 gtgccatgtgacacattctaattggacaatggtatata 39  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  8462239 gtgccacgtgacacattttaattggacaatggtatata 8462276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 11607583 - 11607534
Alignment:
Q  13 cacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11607583 cacattctaattggacaatggtatatatcattatggtacacaagtgctat 11607534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33858599 - 33858538
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  33858599 tgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctat 33858538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 19357315 - 19357262
Alignment:
Q  9 gtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  19357315 gtgacacattctaattggacaatgatatataccattatggtacacaagtgctat 19357262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 33271727 - 33271785
Alignment:
Q  4 gccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    |||| ||| |||||||||||||| |||| ||||||| ||||||| |||| |||||||||    
T  33271727 gccacgtggcacattctaattgggcaatagtatataccattatggtacataagtgctat 33271785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 1826381 - 1826426
Alignment:
Q  13 cacattctaattggacaatggtatatatcattatgttacacaagtg 58  Q
    |||||| |||||| |||||| |||||||||||||| ||||||||||    
T  1826381 cacattttaattgaacaatgatatatatcattatgatacacaagtg 1826426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 44380364 - 44380421
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 58  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44380364 tgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtg 44380421  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37742835 - 37742896
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||| ||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  37742835 tgtgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctat 37742896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 19619217 - 19619269
Alignment:
Q  10 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||||| ||||||| |||||||||||| ||||||| |||||| |||||||    
T  19619217 tgacacattttaattgggcaatggtatataccattatggtacacatgtgctat 19619269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 33509802 - 33509854
Alignment:
Q  13 cacattctaattggacaatggtatatatcattatgttacacaagtgctatttg 65  Q
    |||||||||||| ||||||| |||||| ||||||  |||||||||||||||||    
T  33509802 cacattctaattagacaatgatatataccattattgtacacaagtgctatttg 33509854  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 35094666 - 35094717
Alignment:
Q  9 gtgacacattctaattggacaatggtatatatcattatgttacacaagtgct 60  Q
    |||||||||||||||||||||||| || ||| ||||||| ||||||| ||||    
T  35094666 gtgacacattctaattggacaatgatacataccattatggtacacaaatgct 35094717  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 21606149 - 21606210
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  21606149 tgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagtgctat 21606210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37357978 - 37357917
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  37357978 tgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctat 37357917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 4779703 - 4779752
Alignment:
Q  9 gtgacacattctaattggacaatggtatatatcattatgttacacaagtg 58  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  4779703 gtgacacattctaattggacaatggtatataccattatgatacacaagtg 4779752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 23863852 - 23863803
Alignment:
Q  13 cacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  23863852 cacattctaattggacaatgatatatatcattatggtacactagtgctat 23863803  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25275683 - 25275622
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||| |||| ||||||||||||||||||| |||||| ||||||| |||| |||||||||    
T  25275683 tgtgccacgtgatacattctaattggacaatgatatataccattatgatacagaagtgctat 25275622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 34392130 - 34392081
Alignment:
Q  13 cacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  34392130 cacaatctaattggacaatggtatataccattatggtacacaagtgctat 34392081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 48250271 - 48250327
Alignment:
Q  6 catgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  48250271 catgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctat 48250327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48072497 - 48072558
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||| ||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  48072497 tgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctat 48072558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35341646 - 35341692
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatg 47  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  35341646 tgtgccacgtgacacattctaattggacaatgatatatatcattatg 35341692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31306929 - 31306868
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    |||| ||||||  ||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  31306929 tgtgtcatgtggtacattctaattggacaatgatatatatcattatggtacacaaatgctat 31306868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32694631 - 32694570
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||| |||||||||||||||| | |||||||||||| ||||||  ||||||||||||||    
T  32694631 tgtgccacgtgacacattctaattaggcaatggtatataccattatagtacacaagtgctat 32694570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 40856955 - 40857000
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattat 46  Q
    |||||||  ||||||||||||||||||||||| |||||| ||||||    
T  40856955 tgtgccacatgacacattctaattggacaatgatatataccattat 40857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 5403928 - 5403876
Alignment:
Q  10 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5403928 tgacacattctaattggacaatggtatataccattatggtacacaagtgctat 5403876  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 10503303 - 10503259
Alignment:
Q  18 tctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  10503303 tctaattggacaatggtatataccattatggtacacaagtgctat 10503259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1211905 - 1211848
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 58  Q
    ||||||| ||| ||||||||||| || |||||||||||| ||||||| ||||||||||    
T  1211905 tgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtg 1211848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32644898 - 32644838
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    |||||||  ||| ||| |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  32644898 tgtgccacatgatacaatctaattgaacaatggtatataccattatg-tacacaagtgctat 32644838  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 24337879 - 24337830
Alignment:
Q  13 cacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  24337879 cacattctaattggacaatggtatataccattatggtacacaagtgctat 24337830  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11254089 - 11254028
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11254089 tgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11254028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 41179612 - 41179567
Alignment:
Q  13 cacattctaattggacaatggtatatatcattatgttacacaagtg 58  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||    
T  41179612 cacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 51812024 - 51812081
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 58  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||    
T  51812024 tgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtg 51812081  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 35869632 - 35869575
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 58  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||| || |||||||    
T  35869632 tgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 55590581 - 55590642
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||| |||||||||||||||||| |||||| ||||| ||||||| ||| ||||||||||    
T  55590581 tgtgccacgtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctat 55590642  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 12473823 - 12473875
Alignment:
Q  10 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12473823 tgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12473875  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 12528232 - 12528284
Alignment:
Q  10 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12528232 tgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12528284  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 35781021 - 35781076
Alignment:
Q  3 tgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 58  Q
    ||||| ||| |||||||||||||| |||||||||||| ||||||| ||| ||||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtatataccattatggtacgcaagtg 35781076  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 1796679 - 1796717
Alignment:
Q  20 taattggacaatggtatatatcattatgttacacaagtg 58  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  1796679 taattggacaatggtatataccattatggtacacaagtg 1796717  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22343447 - 22343500
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacaca 54  Q
    |||||||  |||||||||||||||| |||||| |||||| ||||||| ||||||    
T  22343447 tgtgccacatgacacattctaattgaacaatgatatataccattatggtacaca 22343500  T

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Target: scaffold0229 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 13066 - 13005
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||| ||| ||||||||||| || |||||||||||| ||||||| ||||||||||||||    
T  13066 tgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctat 13005  T

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Target: scaffold0519 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11304 - 11365
Alignment:
Q  1 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 62  Q
    ||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11304 tgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11365  T

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