View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9410_low_1 (Length: 928)
Name: NF9410_low_1
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9410_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 421 - 761
Target Start/End: Complemental strand, 37133921 - 37133579
Alignment:
| Q |
421 |
tcagaaatatgaatcatagtatcacatagactatca---gaacaaatcagtgtcatat------gcagtatttccatcttattaacgggctcacacggct |
511 |
Q |
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| T |
37133921 |
tcagaaatatgaattatagtatcacatagaatatcatcagaacaaatcagtgtcatatcaatatgcagtatttccatcttattaacgggctcacacggct |
37133822 |
T |
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| Q |
512 |
atctttgtcacagtaaaaagagacaaaacctcaacattcaaaggagcattgtaatgcatatacataccttaacaaacatagttggtacaataaatactcc |
611 |
Q |
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| T |
37133821 |
atctttgtcacagtaaaaagagacaaaacctcaacattcaaaggagcattgtaatgcatatacataccttaacaaacatagttggtacaataaatactcc |
37133722 |
T |
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| Q |
612 |
agggacatcaacactgtttaggtaagccttcacctctgatatacctaactcggaactcggaatcaataggtgctataaaagccattattatagatgcatg |
711 |
Q |
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| T |
37133721 |
agggacatcaacactgtttaggtaagccttcacctctgatatacct-------gactcggaatcaataggtgctataaaagccattattatagatgcatg |
37133629 |
T |
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| Q |
712 |
aagcgtgagactcaaatttgaagcaaaaaatataacaaaggaaaacaaaa |
761 |
Q |
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| T |
37133628 |
aagcgtgagactcaaatttgaagcaaaaaatataacaaaggcaaacaaaa |
37133579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 766 - 918
Target Start/End: Complemental strand, 37133536 - 37133377
Alignment:
| Q |
766 |
actacttgtcatttctcaaccatttcatccaattcagtaattggcaaacttccaattctacttatt-------cttcaaataaaaatcacacaacatata |
858 |
Q |
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| T |
37133536 |
actacttgtcatttctcaaccatttcatctaattcagtaattggcaaacttccaattctacttattagttattcttcaaataaaaatcacacaacatata |
37133437 |
T |
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| Q |
859 |
agcttcacatatcgattatttaaattattgttacataattgagaactttgaactcctttg |
918 |
Q |
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| T |
37133436 |
agcttcacatatcgattatttaaattattgttacataattgagaactttgaactcctttg |
37133377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 174 - 331
Target Start/End: Complemental strand, 37134093 - 37133936
Alignment:
| Q |
174 |
agaaaggtagtcaaagcaaaggtcttccttttagtgtcactgcatatattctgaaaggctagaattgtaaaatatatcggagttctttctttcgagagct |
273 |
Q |
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| T |
37134093 |
agaaaggtagtcaaagcaaaggtcttcctttttgtgtcactgcatatattctgaaaggctagaattataaagtatatcagagttctttcttccgagagct |
37133994 |
T |
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| Q |
274 |
ctattatgattttgatcatgcagggaccaatgctgctacttctcatttcataaggaaa |
331 |
Q |
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| T |
37133993 |
ctgttatgattttgatcatgcagggaccaatactactacttctcatttcataaggaaa |
37133936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 536 - 758
Target Start/End: Original strand, 47781361 - 47781572
Alignment:
| Q |
536 |
aaaacctcaacattcaaaggagcattgtaatgcatatacataccttaacaaacatagttggtacaataaatactccagggacatcaacactgtttaggta |
635 |
Q |
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| T |
47781361 |
aaaacctcaacattcaaaggagcgttgtat---at-tgcataccttaacacagagagttcgtacagtaaaaattccaggtgcatcaacaccatttaggta |
47781456 |
T |
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| Q |
636 |
agccttcacctctgatatacctaactcggaactcggaatcaataggtgctataaaagccattattatagatgcatgaagcgtgagactcaaatttgaagc |
735 |
Q |
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| T |
47781457 |
agccttcacctctgatatgcct------gaac-cagcagcagtaggtgctataaaagccgttattattgacgcaaaaagcgtgagactcaaatttgaagc |
47781549 |
T |
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| Q |
736 |
aaaaaatataacaaaggaaaaca |
758 |
Q |
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| T |
47781550 |
aaaaaatataaaaaaggcaaaca |
47781572 |
T |
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