View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9410_low_11 (Length: 459)
Name: NF9410_low_11
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9410_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 452
Target Start/End: Original strand, 33780203 - 33780657
Alignment:
| Q |
16 |
tatatttgtgctagctagagaaaagagaaattgtagtatagagtataaccttaatttgtgtgctgtcgcacaatgaaagggtgagacactaaagttaggg |
115 |
Q |
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| T |
33780203 |
tatatttgtgctagctagagaaaagagaaattgtagtatagagtataaccttaattggtgtgctgtcgcacaatgaaagggtgagacactaaagttaggg |
33780302 |
T |
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| Q |
116 |
gtatgtgtggggtttcagaatcagaggcaaaaactg---------------ccactaattgcatgcaaatgcaaatgcaa------tgcaatccagtcct |
194 |
Q |
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| T |
33780303 |
gtatgtgtggggtttcagaatcagaggcaaacactgtctctggctacactgccactaattgcatgcaaatgcaaatgcaaatgcaatgcaatccagtcct |
33780402 |
T |
|
| Q |
195 |
ccatatagtgagtgagggcagaggagaagnnnnnnnnnnnnnnnnnnngctaatgtaagtgctcccacttctctttatcccacgctgcatatcactcacg |
294 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33780403 |
ccatatagtgagtgagggcagaggagaagactactactactacta---gctaatgtaagtgctcccacttctctttatcccacgctgcatatcactcacg |
33780499 |
T |
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| Q |
295 |
tcatttctcttgattctcctttctatattaccttgtttcccaccatgccctctattcttctaatttgctcgcttttttatttgcgtgcaaagaatctgct |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33780500 |
tcatttctcttgattctcctttctatattaccttgtttcccaccatgccctctattcttctaatttgctcgcttttttatttgggtgcaaagaatctgct |
33780599 |
T |
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| Q |
395 |
ctctttatcagtttatcttcccacattattcatgcaagtactttatatgtaacaccaa |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33780600 |
ctctttatcagtttatcttcccacattattcatgcaagtactttatatgtaacaccaa |
33780657 |
T |
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