View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9410_low_13 (Length: 424)
Name: NF9410_low_13
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9410_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Original strand, 41610341 - 41610742
Alignment:
| Q |
16 |
tcacgatgaacctatcgcatctaacaattaaataatatcatatatagcaaagagattcattcattcatattgaacttacaagccaacatcacgcacgagt |
115 |
Q |
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| T |
41610341 |
tcacgatgaacctatcgcatctaacaattaaataatatcatatatagcaaagagattcattcattcatattgaacttacaagccaacatcacgcacgagt |
41610440 |
T |
|
| Q |
116 |
ccaactcctaaacttagaacaataatataacgcaatat----gcaatttacaaatgtttttacttgcgagaatgttaagagttgtctctagcatattcat |
211 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41610441 |
ccaactcctaaactaagaacaataatataacgcaatatatatgcaatttacaaatgtttttacttgggagaatgttaagagttgtctctagcatattcat |
41610540 |
T |
|
| Q |
212 |
cca---gtttctttatcaaactcgacaaaatccaataaaacaatcctgctgaaaagaagctaacaaaccaagcattattatagacaacaacaaaagtttc |
308 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41610541 |
ccaccagtttctttatcaaactcgacaaaatccaataaaacaatcctgctgaaaagaagctaacaaaccaagcattattatagacaacaacaaaagtttc |
41610640 |
T |
|
| Q |
309 |
tgaaactgattttaacgttccaactttatgcaataaaccaggaatcacaggtaacattccaaaaacaagagccacaattgctgccacattaaatccctta |
408 |
Q |
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| T |
41610641 |
tgaaactgattttaacgttccaactttattcaataaaccaggaatcacaggtaacattccaaaaacaagagccacaattgctgccacattaaatccctta |
41610740 |
T |
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| Q |
409 |
gt |
410 |
Q |
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| T |
41610741 |
gt |
41610742 |
T |
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Back To:
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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 235 - 412
Target Start/End: Complemental strand, 27113273 - 27113096
Alignment:
| Q |
235 |
aaaatccaataaaacaatcctgctgaaaagaagctaacaaaccaagcattattatagacaacaacaaaagtttctgaaactgattttaacgttccaactt |
334 |
Q |
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||||||||||| || || |||||||||||||| |||| |||||||||||| || || || |||||||||| | | || ||| |||| ||||||||| |
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| T |
27113273 |
aaaatccaatacaagaaccctgctgaaaagaaactaataaaccaagcattgttgtataccacaacaaaagcattaggaattgaacttaaaattccaactt |
27113174 |
T |
|
| Q |
335 |
tatgcaataaaccaggaatcacaggtaacattccaaaaacaagagccacaattgctgccacattaaatcccttagtat |
412 |
Q |
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| T |
27113173 |
tctgcaagaaaccaggaacaacaggtaaaattccaacaactaaagccacaattgctgctacattaaacccctttgtat |
27113096 |
T |
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