View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9410_low_24 (Length: 348)
Name: NF9410_low_24
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9410_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 48236724 - 48236418
Alignment:
| Q |
1 |
taggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagattgaagttgctacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48236724 |
taggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagattgaagttgctacc |
48236625 |
T |
|
| Q |
101 |
gagagattctcaccatcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtcaaactcttaaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48236624 |
gagagattctcaccatcaaagaaactaggtgaaggtggatacggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtcaaactcttaaatc |
48236525 |
T |
|
| Q |
201 |
ctgaagctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgtatcaacattttttctttgtaccctaaatattaaccatttaataatgcaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48236524 |
ctgaagctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgcatcaacattttttctttgtaccctaaatattaaccatttaataatgcaaa |
48236425 |
T |
|
| Q |
301 |
ttttccc |
307 |
Q |
| |
|
||||||| |
|
|
| T |
48236424 |
ttttccc |
48236418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 3685864 - 3685920
Alignment:
| Q |
115 |
atcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatca |
171 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
3685864 |
atcaatgaaaataggtgaaggtggatatggacctgtgtttaaaggtcaacttgatca |
3685920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University