View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9410_low_27 (Length: 345)
Name: NF9410_low_27
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9410_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 42834649 - 42834315
Alignment:
| Q |
1 |
ctggctatctcaagttgttttaccaaatttgtaatgttggagacatactctggaatatactctggaatatgagtactcaatttagcagtttgtttttgca |
100 |
Q |
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| T |
42834649 |
ctggctacctcaagttgttttaccaaatttgtaatgttggagacatactctggaatatactctggaatatgagtactcaatttagcagtttgtttttgca |
42834550 |
T |
|
| Q |
101 |
actcctcgtctttcaaattaaattcttctaaaagctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatctagttgacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42834549 |
actcctcgtctttcaaattaaattcttctaaaagctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatctagttgacc |
42834450 |
T |
|
| Q |
201 |
ctcaccattcccaacttggaccttcaactttatattctcttcttctgaaagtcgaagctttgaattggtaacccttagctcttcctccgtttcaataann |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42834449 |
ctcaccattcccaacttggaccttcaactttatattctcttcttctgaaagtcgaagctttgaattggtaacccttagctcttcctccgttccaataatt |
42834350 |
T |
|
| Q |
301 |
nnnnngatcaaatcatcataacttctgatgtccat |
335 |
Q |
| |
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||||||||||||||||||||| ||||||| |
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| T |
42834349 |
tttttgatcaaatcatcataacttctattgtccat |
42834315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 42843178 - 42843082
Alignment:
| Q |
197 |
gaccctcaccattcccaacttggaccttcaactttatattctcttcttctgaaagtcgaagctttgaattggtaacccttagctcttcctccgtttc |
293 |
Q |
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| T |
42843178 |
gaccctcactactctcaacttgaaccttcaactttatattctcttcttccgaaagctgaagctttaaattggtaacccttagctcttcctccttttc |
42843082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 287
Target Start/End: Complemental strand, 42819285 - 42819167
Alignment:
| Q |
169 |
ttcaattcttcgctcacattatctagttgaccctcaccattcccaacttggaccttcaactttatattctcttcttctgaaagtcgaagctttgaattgg |
268 |
Q |
| |
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||||||||||| | ||||||||| | ||||||| | ||| ||||||| |||||||| || ||| ||||| ||| |||||| |||||||| |||||| |
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| T |
42819285 |
ttcaattcttcacacacattatcaaactgacccttgctgttctcaacttgaaccttcaagttgataacctctttttccgaaagttgaagctttaaattgg |
42819186 |
T |
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| Q |
269 |
taacccttagctcttcctc |
287 |
Q |
| |
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|||| |||||||||||||| |
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| T |
42819185 |
taactcttagctcttcctc |
42819167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 42819461 - 42819413
Alignment:
| Q |
59 |
actctggaatatgagtactcaatttagcagtttgtttttgcaactcctc |
107 |
Q |
| |
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|||||| |||||||||| ||||| |||||||||||||||||||||||| |
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| T |
42819461 |
actctgaaatatgagtatccaattcagcagtttgtttttgcaactcctc |
42819413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 42843369 - 42843301
Alignment:
| Q |
123 |
ttcttctaaaagctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatc |
191 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||| |||| ||| || |||||||||| |||||||||||| |
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| T |
42843369 |
ttcttttaaaagctccttttgtttattcaactccttctctttcaggttcaattctttgctcacattatc |
42843301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 294
Target Start/End: Complemental strand, 12627892 - 12627732
Alignment:
| Q |
134 |
gctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatctagttgaccctcaccattcccaacttggaccttcaactttat |
233 |
Q |
| |
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|||||||| |||| | || ||||| || ||| || |||| |||||||| ||||||||| || | |||||||| |||| ||| || |||||||||||||| |
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| T |
12627892 |
gctcttttagtttacgcacctcttcctctttcagcttcagttcttcgcgcacattatcaagctcaccctcactattctcaatttcaaccttcaactttat |
12627793 |
T |
|
| Q |
234 |
attctcttcttctgaaagtcgaagctttgaattggtaacccttagctcttcctccgtttca |
294 |
Q |
| |
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| | |||| || ||||||| |||| || |||||| || ||||||||||||||| ||||| |
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| T |
12627792 |
agtttcttgttttgaaagttgaagtttaaaattggaaattcttagctcttcctccttttca |
12627732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 287
Target Start/End: Complemental strand, 12622017 - 12621861
Alignment:
| Q |
131 |
aaagctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatctagttgaccctcaccattcccaacttggaccttcaactt |
230 |
Q |
| |
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||||||||||||||| || ||||| ||| || || ||||||||||| | ||| ||||| || ||||||| | |||| || |||| || |||||||| |
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| T |
12622017 |
aaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactttcaactt |
12621918 |
T |
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| Q |
231 |
tatattctcttcttctgaaagtcgaagctttgaattggtaacccttagctcttcctc |
287 |
Q |
| |
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|||| |||||| ||| ||||| |||| || |||| | ||| |||||||||||||| |
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|
| T |
12621917 |
tataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctc |
12621861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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