View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9410_low_29 (Length: 331)
Name: NF9410_low_29
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9410_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 40452287 - 40452406
Alignment:
| Q |
194 |
taatatgcttcaaatctagtgtgcaaaatcacaaaacattttaaaacaaattgcatagaagtaatttacttgacaattgaataagcttgactggtttgta |
293 |
Q |
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| T |
40452287 |
taatatgcttcaaatctagtgtgcaaaatcacaaaacattttaaaacaaattgcatagaagtaatttacttgacaattgaataagcttgactggtttgta |
40452386 |
T |
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| Q |
294 |
gtgggtttggatacgactgc |
313 |
Q |
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| T |
40452387 |
gtgggtttggatacgactgc |
40452406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 40452097 - 40452199
Alignment:
| Q |
1 |
acataaataattcagaaaagaaaataattcacaaacaagggagaagattgggccactcacagtttgtgcaaccacatcttctggacttacaaaagtattc |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40452097 |
acataaatcattcagaaaagaaaataattcacaaacaagggagaagattggaccactcacagtttgtgcaaccacatcttctggacttacaaaagtattc |
40452196 |
T |
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| Q |
101 |
ctg |
103 |
Q |
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||| |
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| T |
40452197 |
ctg |
40452199 |
T |
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