View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9410_low_48 (Length: 240)
Name: NF9410_low_48
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9410_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 24727036 - 24727232
Alignment:
| Q |
18 |
ctctctcttcctccatcctctgccttccttatttctccaagtccccactccgtcgttccctctcctccaccaccaccatccctcttctgtctccggtgac |
117 |
Q |
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| T |
24727036 |
ctctctcttcctccatcctctgccttccttatttctccaagtccccactccgtcgttccctctcctccaccaccaccatccctcttctgtctccggtgac |
24727135 |
T |
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| Q |
118 |
ggcggcggtgactaccaaaaa-ccccctttgtctcacccgcaaccaccattggccgctgccatggcctccctcactctccctcatcaaacatccttgtca |
216 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| || |
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| T |
24727136 |
ggcgg------ctaccaaaaacccccctttgtctcacccgcaaccaccattggctgctgccatggcctctctcactctccctcgtcaaacatccttgaca |
24727229 |
T |
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