View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9410_low_51 (Length: 238)

Name: NF9410_low_51
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9410_low_51
NF9410_low_51
[»] chr4 (8 HSPs)
chr4 (1-223)||(25041587-25041809)
chr4 (130-218)||(25019894-25019982)
chr4 (131-194)||(4604427-4604490)
chr4 (146-194)||(25169301-25169349)
chr4 (146-194)||(25181089-25181137)
chr4 (146-194)||(25251905-25251953)
chr4 (120-178)||(4626640-4626697)
chr4 (4-62)||(25019999-25020057)
[»] chr8 (2 HSPs)
chr8 (119-208)||(3599776-3599865)
chr8 (1-82)||(3599687-3599769)
[»] chr2 (1 HSPs)
chr2 (144-192)||(42169493-42169541)
[»] chr6 (1 HSPs)
chr6 (144-194)||(29462174-29462224)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 25041809 - 25041587
Alignment:
Q  1 agcttaaacaatcaaaattttctaacaaaatttaatacttaaagaccaaatatttagggatgaagtgtatgagtgatagtattaatgaaagcttgaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  25041809 agcttaaacaatcaaaattttctaacaaaatttaatacttaaagaccaaatatttagggatgaagtgtatgagtaatagtattaatgaaagcttgagaat 25041710  T
Q  101 tagaggttaattaataagatataattttctgtgttgataatatagtatgaaggtgctgcaaatgaaggtggaagaggacaaagtatatgggataaatatg 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25041709 tagaggttaattattaagatataattttctgtgttgataatatagtatgaaggtgctgcaaatgaaggtggaagaggacaaagtatatgggataaatatg 25041610  T
Q  201 ttcatgaacatccaggtatattt 223  Q
    |||||||||||||||||||||||    
T  25041609 ttcatgaacatccaggtatattt 25041587  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 25019982 - 25019894
Alignment:
Q  130 tgtgttgataatatagtatgaaggtgctgcaaatgaaggtggaagaggacaaagtatatgggataaatatgttcatgaacatccaggta 218  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||  |||||||||||||||||    
T  25019982 tgtgttgataatgtagtatgaaggtgctgcaaatgaaggtggaagaggacaaagtggttgggataaatatactcatgaacatccaggta 25019894  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 4604490 - 4604427
Alignment:
Q  131 gtgttgataatatagtatgaaggtgctgcaaatgaaggtggaagaggacaaagtatatgggata 194  Q
    |||||||||||||||||||||||||||| || |||||| ||||||||| || ||| ||||||||    
T  4604490 gtgttgataatatagtatgaaggtgctgtaagtgaaggcggaagaggaaaaggtacatgggata 4604427  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 25169349 - 25169301
Alignment:
Q  146 tatgaaggtgctgcaaatgaaggtggaagaggacaaagtatatgggata 194  Q
    ||||||||||| |||| ||||||||||||||||| |||||| |||||||    
T  25169349 tatgaaggtgcagcaagtgaaggtggaagaggaccaagtatttgggata 25169301  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 25181137 - 25181089
Alignment:
Q  146 tatgaaggtgctgcaaatgaaggtggaagaggacaaagtatatgggata 194  Q
    ||||||||||| |||| ||||||||||||||||  ||||||||||||||    
T  25181137 tatgaaggtgcagcaagtgaaggtggaagaggagcaagtatatgggata 25181089  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 25251905 - 25251953
Alignment:
Q  146 tatgaaggtgctgcaaatgaaggtggaagaggacaaagtatatgggata 194  Q
    ||||||||||| |||| ||||||||||||||||  ||||||||||||||    
T  25251905 tatgaaggtgcagcaagtgaaggtggaagaggagcaagtatatgggata 25251953  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 4626697 - 4626640
Alignment:
Q  120 tataattttctgtgttgataatatagtatgaaggtgctgcaaatgaaggtggaagagga 178  Q
    ||||||||| |||||||||||| |||||||||||||||| || |||||  |||||||||    
T  4626697 tataatttt-tgtgttgataatgtagtatgaaggtgctgtaagtgaagacggaagagga 4626640  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 25020057 - 25019999
Alignment:
Q  4 ttaaacaatcaaaattttctaacaaaatttaatacttaaagaccaaatatttagggatg 62  Q
    |||| |||||||||||||| |||||| |||  |||||||||| |||| |||||||||||    
T  25020057 ttaatcaatcaaaattttcgaacaaatttttttacttaaagatcaaagatttagggatg 25019999  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 3599776 - 3599865
Alignment:
Q  119 atataattttctgtgttgataatatagtatgaaggtgctgcaaatgaaggtggaagaggacaaagtatatgggataaatatgttcatgaa 208  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||| | ||||||||||||| |||||||    
T  3599776 atataattttttgtgttgataatgtagtatgaagatgctgcaaatgaaggtgtaagtggacaaagtgtttgggataaatatgctcatgaa 3599865  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3599687 - 3599769
Alignment:
Q  1 agcttaaacaatcaaaattttctaacaaaatttaatac-ttaaagaccaaatatttagggatgaagtgtatgagtgatagtat 82  Q
    ||||||| ||||||||| |||| ||||||||| || || |||||||||||| ||||||||||| ||||| || || |||||||    
T  3599687 agcttaatcaatcaaaaatttcgaacaaaattcaacacattaaagaccaaaaatttagggatggagtgtgtgggtaatagtat 3599769  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 42169541 - 42169493
Alignment:
Q  144 agtatgaaggtgctgcaaatgaaggtggaagaggacaaagtatatggga 192  Q
    ||||||||||||||||||| |||||||| ||||||  ||||||||||||    
T  42169541 agtatgaaggtgctgcaaaagaaggtgggagaggagcaagtatatggga 42169493  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 29462224 - 29462174
Alignment:
Q  144 agtatgaaggtgctgcaaatgaaggtggaagaggacaaagtatatgggata 194  Q
    |||||||||||||||| |||   ||||||||||||| ||||||||||||||    
T  29462224 agtatgaaggtgctgccaattttggtggaagaggaccaagtatatgggata 29462174  T

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