View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9410_low_52 (Length: 236)
Name: NF9410_low_52
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9410_low_52 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 25041880 - 25042105
Alignment:
| Q |
1 |
tcaagttttcaaatgtgagtgaagttttataacatacaaaattttacaaaacgcacctggtaagaggatgaggcagtaccaaatatgaaaccttttggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25041880 |
tcaagttttcaaatgtgagtgaagttttataacatacaaaattttacaaaacgcacctggtaagaggatgaggcagtaccaaatatgaaaccttttggaa |
25041979 |
T |
|
| Q |
101 |
aactactacggtttagagaagtacgatcaacaagtggtgtaggagtaacagctgctgccattattggaacaaaggagctaatgataaaattcaagacact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25041980 |
aactactacggtttagagaagtacgatcaacaagtggtgtaggagtaacagatgctgccattattggaacaaaggagctaatgataaaattcaagacact |
25042079 |
T |
|
| Q |
201 |
gaagtagaggagatattgatgtccat |
226 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
25042080 |
gaagtagaggagatattgatggccat |
25042105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 25020170 - 25020357
Alignment:
| Q |
26 |
tttataacatacaaaattttacaaaacgcacctggtaagaggatgaggcagtaccaaatatgaaaccttttggaaaactactacggtttagagaagtacg |
125 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||| ||| |||| ||| |||||||||| ||||||||||| |||||||| ||||| |||||||||||| | |
|
|
| T |
25020170 |
tttataacatataaaatgttacaaaacacaccttgtaggaggccgagccagtaccaaaaatgaaacctttgggaaaactgctacgttttagagaagtatg |
25020269 |
T |
|
| Q |
126 |
atcaacaagtggtgtaggagtaacagctgctgccattattggaacaaaggagctaatgataaaattcaagacactgaagtagaggaga |
213 |
Q |
| |
|
| |||||||| ||||||||||| ||||||||||||| |||||||| ||| |||||| ||| | ||||||||| | |||||||||| |
|
|
| T |
25020270 |
gttaacaagtgttgtaggagtaagagctgctgccattgttggaacacaggtgctaatagtaacagtcaagacaccaaggtagaggaga |
25020357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University