View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9410_low_6 (Length: 754)

Name: NF9410_low_6
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9410_low_6
NF9410_low_6
[»] chr7 (23 HSPs)
chr7 (4-743)||(36463846-36464581)
chr7 (370-743)||(8414489-8414848)
chr7 (370-741)||(3934782-3935139)
chr7 (371-741)||(3932543-3932899)
chr7 (371-700)||(19788938-19789272)
chr7 (373-700)||(19786632-19786964)
chr7 (371-741)||(8733495-8733850)
chr7 (371-743)||(3052026-3052387)
chr7 (369-569)||(8731174-8731359)
chr7 (493-741)||(42678669-42678934)
chr7 (371-457)||(18395411-18395497)
chr7 (371-457)||(42678571-42678657)
chr7 (371-457)||(16496953-16497039)
chr7 (371-457)||(16535135-16535221)
chr7 (371-457)||(16630441-16630527)
chr7 (459-569)||(28610315-28610424)
chr7 (655-741)||(16535260-16535346)
chr7 (655-741)||(16630316-16630402)
chr7 (368-457)||(21769066-21769155)
chr7 (495-547)||(18395336-18395388)
chr7 (655-741)||(16497078-16497164)
chr7 (373-617)||(19093846-19094092)
chr7 (371-425)||(42680808-42680862)
[»] chr8 (6 HSPs)
chr8 (371-743)||(21268120-21268487)
chr8 (371-740)||(36379465-36379822)
chr8 (371-741)||(4876820-4877176)
chr8 (371-741)||(4879148-4879504)
chr8 (369-741)||(24519151-24519510)
chr8 (370-740)||(36377180-36377537)
[»] chr1 (13 HSPs)
chr1 (371-743)||(29833076-29833433)
chr1 (371-740)||(734579-734933)
chr1 (371-743)||(2403835-2404185)
chr1 (371-741)||(8933549-8933913)
chr1 (371-569)||(10909108-10909292)
chr1 (370-569)||(10911352-10911536)
chr1 (371-569)||(13011698-13011881)
chr1 (492-589)||(29833852-29833949)
chr1 (371-457)||(29833960-29834046)
chr1 (371-572)||(2409957-2410136)
chr1 (647-744)||(2416660-2416758)
chr1 (487-646)||(18353733-18353894)
chr1 (659-730)||(419213-419284)
[»] chr4 (13 HSPs)
chr4 (371-741)||(45162007-45162364)
chr4 (370-741)||(42468438-42468795)
chr4 (373-741)||(45166899-45167254)
chr4 (371-741)||(42470768-42471124)
chr4 (492-709)||(50855868-50856085)
chr4 (371-642)||(19429076-19429334)
chr4 (371-569)||(13774151-13774336)
chr4 (495-697)||(8739264-8739467)
chr4 (374-569)||(13776449-13776630)
chr4 (371-457)||(50855771-50855857)
chr4 (507-633)||(43179575-43179710)
chr4 (494-628)||(24908156-24908298)
chr4 (371-432)||(8739501-8739562)
[»] chr2 (13 HSPs)
chr2 (371-740)||(31486712-31487069)
chr2 (369-740)||(31488996-31489355)
chr2 (482-739)||(29801805-29802067)
chr2 (371-569)||(42275556-42275739)
chr2 (371-569)||(42277782-42277965)
chr2 (489-741)||(34576694-34576969)
chr2 (370-725)||(23859825-23860188)
chr2 (371-457)||(5164151-5164237)
chr2 (377-457)||(8995076-8995156)
chr2 (377-457)||(15730013-15730093)
chr2 (371-433)||(39816089-39816151)
chr2 (379-432)||(34576612-34576665)
chr2 (493-534)||(8995169-8995210)
[»] chr5 (19 HSPs)
chr5 (371-739)||(11852175-11852519)
chr5 (492-740)||(23164347-23164595)
chr5 (493-740)||(37207701-37207948)
chr5 (492-740)||(11850014-11850262)
chr5 (492-740)||(22600741-22600989)
chr5 (493-636)||(37215396-37215539)
chr5 (493-741)||(1779316-1779581)
chr5 (370-457)||(11849916-11850003)
chr5 (371-457)||(23164254-23164340)
chr5 (370-457)||(22601000-22601088)
chr5 (371-457)||(37215551-37215638)
chr5 (371-457)||(1779222-1779303)
chr5 (371-449)||(21743719-21743797)
chr5 (371-442)||(37207998-37208070)
chr5 (482-569)||(21743622-21743709)
chr5 (530-741)||(1779587-1779815)
chr5 (371-432)||(15469197-15469258)
chr5 (495-535)||(1779181-1779221)
chr5 (674-741)||(37207640-37207707)
[»] scaffold0599 (1 HSPs)
scaffold0599 (371-606)||(1579-1801)
[»] chr3 (5 HSPs)
chr3 (371-569)||(4530835-4531020)
chr3 (370-563)||(4533138-4533318)
chr3 (495-741)||(18966221-18966480)
chr3 (569-644)||(1701104-1701179)
chr3 (570-626)||(8535522-8535578)
[»] scaffold0050 (4 HSPs)
scaffold0050 (482-648)||(29261-29426)
scaffold0050 (482-648)||(31574-31741)
scaffold0050 (371-432)||(29453-29514)
scaffold0050 (371-432)||(31768-31829)
[»] scaffold0008 (2 HSPs)
scaffold0008 (371-457)||(88445-88531)
scaffold0008 (693-741)||(73105-73153)
[»] scaffold1361 (1 HSPs)
scaffold1361 (371-457)||(53-140)
[»] scaffold0098 (1 HSPs)
scaffold0098 (371-449)||(3707-3785)
[»] chr6 (2 HSPs)
chr6 (503-709)||(21199149-21199374)
chr6 (373-432)||(20642300-20642359)
[»] scaffold0312 (1 HSPs)
scaffold0312 (659-730)||(11287-11358)
[»] scaffold0045 (2 HSPs)
scaffold0045 (368-432)||(64082-64144)
scaffold0045 (368-432)||(71414-71476)


Alignment Details
Target: chr7 (Bit Score: 674; Significance: 0; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 4 - 743
Target Start/End: Original strand, 36463846 - 36464581
Alignment:
Q  4 gactttacataagagctcgtaaaattgtgggagaacttgaagtcactattaacatgattccaagcttggaacaacttgtttatgaagtcatcatgtctat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36463846 gactttacataagagctcgtaaaattgtgggagaacttgaagtcactattaacatgattccaagcttggaaaaacttgtttatgaagtcatcatgtctat 36463945  T
Q  104 gttaaaggagtttagagacagggaaagaaacctatgatccttatgtttgaggttgtgtttatgttcacaagataaccaatcaaaaactccaatggaatcg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36463946 gttaaaggagtttagagacagggaaagaaacctatgatccttatgtttgaggttgtgtttatgttcacaagataaccaatcaaaaactccaatggaatcg 36464045  T
Q  204 tagtcacttaccaaaataaaattcattattaagctatggaagtatggaagtaaatcatgcgaatccaagtcataaaacatcgtatacacgttctgtgtgt 303  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464046 tagtcaccttccaaaataaaattcattattaagctatggaagtatggaagtaaatcatgcgaatccaagtcataaaacatcgtatacacgttctgtgtgt 36464145  T
Q  304 ctggtttggattccnnnnnnncaagtatcatcctaatgtagcacaaagcatttttcgaggaatcatttggctcagggacaaaaggaaaggtagagaaaat 403  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36464146 ctggtttggattccaaaaaaacaagtatcatcctaatgtagcacaaagcatttttcgaggaatcgtttggctcagggacaaaaggaaaggtagagaaaat 36464245  T
Q  404 tgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgactatgcttgagtatcttgagtatgccaaaacactag 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  36464246 tgagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgactatgcttgagtatcttgagtatgccaaaacactag 36464341  T
Q  504 gtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtaca 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36464342 gtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctggagatatggatactctagtaca 36464441  T
Q  604 taaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattctagagacttctat 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36464442 taaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctat 36464541  T
Q  704 tttattatttagtgttctagagacttccacattattctct 743  Q
     |||||||||||||||||||||||||||||||||||||||    
T  36464542 attattatttagtgttctagagacttccacattattctct 36464581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 370 - 743
Target Start/End: Original strand, 8414489 - 8414848
Alignment:
Q  370 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 469  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||    |||||| |    
T  8414489 ttggctcagggacaaaaggaaaggtagagaaaatagaaaaacactctaatattctcaaagaaaagttatattatttgaatgattcaat----gcttgaat 8414584  T
Q  470 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    |||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  8414585 atgcttg---------agtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaaaatctagaaaca 8414675  T
Q  570 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 669  Q
    |||||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  8414676 aagaaaagtctagagatatggatattttagtatataaaactagaa-gatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagttt 8414774  T
Q  670 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctct 743  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  8414775 ccttattattccctagtattctagagacttctatattattctttagtgttctagatacttccacattattctct 8414848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 370 - 741
Target Start/End: Complemental strand, 3935139 - 3934782
Alignment:
Q  370 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 469  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| |    
T  3935139 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat----gcttgatt 3935044  T
Q  470 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    |||||||||||||          ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  3935043 atgcttgagtatc----------caaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaaca 3934954  T
Q  570 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 669  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |    
T  3934953 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagctt 3934854  T
Q  670 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    |||||||||||||||||||||||||| |||| || ||||| |||||| ||||||||||||||| ||||||||    
T  3934853 ccttattattccctagtattctagagtcttccatattattctttagtcttctagagacttccatattattct 3934782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 371 - 741
Target Start/End: Complemental strand, 3932899 - 3932543
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| ||    
T  3932899 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat----gcttgatta 3932804  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 570  Q
    ||||||||||||          ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  3932803 tgcttgagtatc----------caaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaacaa 3932714  T
Q  571 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 670  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  3932713 agaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttc 3932614  T
Q  671 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    ||||||||||||||||||||||||| |||| || ||||| |||||| ||||||||||||||| ||||||||    
T  3932613 cttattattccctagtattctagagtcttccatattattctttagtcttctagagacttccatattattct 3932543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 371 - 700
Target Start/End: Complemental strand, 19789272 - 19788938
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatg-----ct 464  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||   ||     ||    
T  19789272 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 19789173  T
Q  465 tgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctag 564  Q
    ||| ||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  19789172 tgagtat-cttgaatgtcttgaatatgccaaaacactaggtggtgagccttatttatactactctagtaaggctctccattacaaactagaaatatctag 19789074  T
Q  565 aaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagt 664  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19789073 aaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagt 19788974  T
Q  665 agcatccttattattccctagtattctagagacttc 700  Q
    ||| ||||||||||||||||||||||||||||||||    
T  19788973 agcttccttattattccctagtattctagagacttc 19788938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 373 - 700
Target Start/End: Complemental strand, 19786964 - 19786632
Alignment:
Q  373 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatg-----cttg 466  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||   ||     ||||    
T  19786964 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatcttg 19786865  T
Q  467 actatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa 566  Q
    | ||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19786864 agtat-cttgaatgtcttgaatatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaa 19786766  T
Q  567 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtag 666  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19786765 acaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtag 19786666  T
Q  667 catccttattattccctagtattctagagacttc 700  Q
    | |||||||||||||||| |||||||||||||||    
T  19786665 cttccttattattccctaatattctagagacttc 19786632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 371 - 741
Target Start/End: Original strand, 8733495 - 8733850
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaattaatgcttgact 469  Q
    |||||||||||||||||  |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||    ||||||      
T  8733495 tggctcagggacaaaagagaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaat----gcttgatg 8733590  T
Q  470 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  8733591 at---------tcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctcctttacaaactagaaatatctagaaaca 8733681  T
Q  570 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 669  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||| |    
T  8733682 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaaga---ccctagtgcttatttagtagtgtctagtagctt 8733778  T
Q  670 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||    
T  8733779 ccttattattccctagtattctagagacttctatattattctttagtgttctagagacttccatattattct 8733850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 371 - 743
Target Start/End: Complemental strand, 3052387 - 3052026
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||| |||||||||||||| ||||||||||||  ||||||  |||| ||||||||||||||  |||||||| ||||||| ||||||    |||||| ||    
T  3052387 tggctgagggacaaaaggaatggtagagaaaataaagaaac--tctattattctcaaagaaagtttatattatttgaatgcttcaat----gcttgagta 3052294  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 570  Q
    | ||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3052293 tacttgagtatat---------caaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 3052203  T
Q  571 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 670  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||    
T  3052202 agaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagttaagacttccctaatgcttatttagtagtgtctagtagcttc 3052103  T
Q  671 cttattattcc----ctagtattctagagacttctattttattatttagtgttctagagacttccacattattctct 743  Q
    |||||||||      |||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||    
T  3052102 cttattatttattatctagtattctagagacttctatattattctttagtgttatagagacttcgacattattctct 3052026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 369 - 569
Target Start/End: Original strand, 8731174 - 8731359
Alignment:
Q  369 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgac 468  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||     
T  8731174 tttggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgat 8731269  T
Q  469 tatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 568  Q
    | |           || | | |||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  8731270 tct-----------ttaaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaattagaaatatctagaaac 8731358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 493 - 741
Target Start/End: Original strand, 42678669 - 42678934
Alignment:
Q  493 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca---------aagaaaagtctaga 583  Q
    ||||||||| ||||||||||||||||||||||||  | |||||| ||| ||||| ||||||||| ||||||||||||         |||||| | |||||    
T  42678669 caaaacacttggtggtgagccttatttatactaccttgggaaggttctacattacaaactagaattatctagaaacattgattacaaagaaaggcctaga 42678768  T
Q  584 gatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt------atttagtag--tgtctagtagcatccttat 675  Q
     | |||||||||||||  ||||  ||||||||||||||||||  | |||| || ||||||||||      |||||||||  ||||||||||| |||||||    
T  42678769 aacatggatactctaggtcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagtagagtgtctagtagcttccttat 42678868  T
Q  676 tattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    |||||| ||||||| |||||||||| || ||||| |||||| ||||||| ||||||| ||||||||    
T  42678869 tattccatagtattttagagacttccatattattctttagttttctagaaacttccatattattct 42678934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 371 - 457
Target Start/End: Complemental strand, 18395497 - 18395411
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18395497 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 18395411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 371 - 457
Target Start/End: Original strand, 42678571 - 42678657
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42678571 tggctcagggacaaaaggaaaggtagagaaaataaagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 42678657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 371 - 457
Target Start/End: Original strand, 16496953 - 16497039
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16496953 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16497039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 371 - 457
Target Start/End: Original strand, 16535135 - 16535221
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16535135 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16535221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 371 - 457
Target Start/End: Complemental strand, 16630527 - 16630441
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16630527 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16630441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 459 - 569
Target Start/End: Original strand, 28610315 - 28610424
Alignment:
Q  459 aatgcttgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaat 558  Q
    ||||||||| ||||||| ||||||| || | |||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||    
T  28610315 aatgcttgagtatgcttcagtatct-gaatgtgcctaaacacttggtggtgagccttatttatactactctagaaaggctctacattacaaactagaaat 28610413  T
Q  559 atctagaaaca 569  Q
    |||||||||||    
T  28610414 atctagaaaca 28610424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 655 - 741
Target Start/End: Original strand, 16535260 - 16535346
Alignment:
Q  655 agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    ||||||||||||| || |||||||||| |||||||||||||||||| |  ||||| |||| | |||||||| |||||| ||||||||    
T  16535260 agtgtctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattct 16535346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 655 - 741
Target Start/End: Complemental strand, 16630402 - 16630316
Alignment:
Q  655 agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    ||||||||||||| || |||||||||| |||||||||||||||||| |  ||||| |||| | |||||||| |||||| ||||||||    
T  16630402 agtgtctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattct 16630316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 457
Target Start/End: Original strand, 21769066 - 21769155
Alignment:
Q  368 atttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    |||| |||||||||  |||||||||||||||||||| ||||||| || |||||||||||||||||  |  ||||| ||||||| ||||||    
T  21769066 attttgctcagggatgaaaggaaaggtagagaaaatagagaaactctttaatattctcaaagaaagttgttattatttgaatgtttcaat 21769155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 495 - 547
Target Start/End: Complemental strand, 18395388 - 18395336
Alignment:
Q  495 aaacactaggtggtgagccttatttatactactctaggaaggctctccattat 547  Q
    |||||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  18395388 aaacacttagtggtgagccttatttatactactctaggaaggctctacattat 18395336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 741
Target Start/End: Original strand, 16497078 - 16497164
Alignment:
Q  655 agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||| |  ||||| |||| | |||||||| | |||| ||||||||    
T  16497078 agtgtctagtagcttccttattattccatagtattctagaaacttccacattattctttattattctagaggcatccatattattct 16497164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 373 - 617
Target Start/End: Original strand, 19093846 - 19094092
Alignment:
Q  373 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgactatg 472  Q
    |||||||| |||||||| |||||||||||||  |||||| ||||||||||||||||||||  ||||||   ||  || |||   | |||| ||||  ||     
T  19093846 gctcagggtcaaaaggagaggtagagaaaat--agaaactctctaatattctcaaagaaagtttatat---ttatattatt---tgaatgtttga--att 19093935  T
Q  473 cttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaag----gctctccattataaactagaaatatctagaa-- 566  Q
     |||| || ||||||||||||  |||||| ||||| || |||||||||||||||||||| |||     |||| ||||| |||||||||||||||| ||      
T  19093936 tttgaata-cttgagtatgcctgaacacttggtggcgaaccttatttatactactctagaaagacgtactctacattacaaactagaaatatctaaaaat 19094034  T
Q  567 -------acaaagaaaagtctagagatatggatactctagtacataaaactagaagga 617  Q
           ||||||||||||||||||| ||||||||||||||  ||||  |||||||||    
T  19094035 atcgattacaaagaaaagtctagagacatggatactctagtttataagtctagaagga 19094092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 42680862 - 42680808
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctc 425  Q
    ||||| ||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  42680862 tggctgaggaacaaaatgaaaggtagagaaaatagagaaacactctaatattctc 42680808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 371 - 743
Target Start/End: Original strand, 21268120 - 21268487
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgact 469  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||    |||||| |    
T  21268120 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat----gcttgatt 21268215  T
Q  470 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    || ||||||||| | || |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21268216 at-cttgagtatttggattatgcctaaacactaggtagtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaaca 21268314  T
Q  570 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 669  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |    
T  21268315 aagaaaagtctagagatatggatactttagtacataaaactagaaggatctagaaaagtcaagacttccctagt-tttatttagtagtgtctagtagctt 21268413  T
Q  670 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctct 743  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  21268414 ccttattattccctagtattctagagacttctatattattctttagtgttctagagacttccacattattctct 21268487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 371 - 740
Target Start/End: Original strand, 36379465 - 36379822
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgact 469  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||                
T  36379465 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat------------ 36379552  T
Q  470 atgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 568  Q
      |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  36379553 --gcttgattatcttgagtatgccaaaacacccaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctggaaac 36379650  T
Q  569 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagca 668  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  36379651 aaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagct 36379750  T
Q  669 tccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 740  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  36379751 tccttattattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattc 36379822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 371 - 741
Target Start/End: Complemental strand, 4877176 - 4876820
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||                 
T  4877176 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaatcattcaat------------- 4877090  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 570  Q
     |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4877089 -gcttgattatcttgagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 4876991  T
Q  571 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 670  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  4876990 agaaaagtctagagatatggatactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtttctagtagcttc 4876891  T
Q  671 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    |||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  4876890 cttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 4876820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 371 - 741
Target Start/End: Complemental strand, 4879504 - 4879148
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||                 
T  4879504 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaatcattcaat------------- 4879418  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 570  Q
     |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4879417 -gcttgattatcttgagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 4879319  T
Q  571 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 670  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  4879318 agaaaagtctagagatatggatactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtttctagtagcttc 4879219  T
Q  671 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    |||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  4879218 cttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 4879148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 369 - 741
Target Start/End: Original strand, 24519151 - 24519510
Alignment:
Q  369 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgac 468  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||     
T  24519151 tttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttgaatgattcaat----gcttgat 24519246  T
Q  469 tatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 568  Q
    ||||||| ||||         |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24519247 tatgcttcagta---------tgccaaaacactagatggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 24519337  T
Q  569 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagca 668  Q
    ||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||     
T  24519338 aaagaaaagtctagagatatggatacttttgtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctggtagct 24519437  T
Q  669 tccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    |||||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  24519438 tccttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 24519510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 370 - 740
Target Start/End: Original strand, 36377180 - 36377537
Alignment:
Q  370 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgac 468  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||               
T  36377180 ttggctcaaggacaaa-ggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat----------- 36377267  T
Q  469 tatgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaa 567  Q
       |||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  |||    
T  36377268 ---gcttgattattttgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaagtagaaatatctgaaaa 36377364  T
Q  568 caaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagc 667  Q
    |||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36377365 caaagaaaagttcagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagc 36377464  T
Q  668 atccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 740  Q
     ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  36377465 ttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattc 36377537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 262; Significance: 1e-145; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 371 - 743
Target Start/End: Original strand, 29833076 - 29833433
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  29833076 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat------------- 29833162  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 570  Q
     ||||||  || |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29833163 -gcttgatgat-ttgaatgtgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 29833260  T
Q  571 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 670  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  29833261 agaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttc 29833360  T
Q  671 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctct 743  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  29833361 cttattattccctagtattctagagacttctatattattctttagtgttctagagacttccacattattctct 29833433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 371 - 740
Target Start/End: Original strand, 734579 - 734933
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||||||||||| |||||||                 
T  734579 tggctcagggacaaaaggaaaggtagagaaaatagagaaacact--aatattctcaaggaaaagttatattacttgaatcattcaat------------- 734663  T
Q  471 tgcttgagtatcttgagtatg-ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
     |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  734664 -gcttgattatcttgagtatgaccaaaacactaggtggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaaca 734762  T
Q  570 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 669  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  734763 aagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagctt 734862  T
Q  670 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 740  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||    
T  734863 ccttgttattccctagtattctagagacttctatattattctttagtcttctaaagacttccacattattc 734933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 371 - 743
Target Start/End: Original strand, 2403835 - 2404185
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaattaatgcttgact 469  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  |||||||| ||||||| |||              |    
T  2403835 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttc--------------t 2403920  T
Q  470 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    ||||||||      |||   ||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  2403921 atgcttga------tga---tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 2404011  T
Q  570 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 669  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |    
T  2404012 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagctt 2404111  T
Q  670 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctct 743  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||||||||    
T  2404112 ccttattattccctagtattctagagacttctatattattctttagtcttctagagatttccacattattctct 2404185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 371 - 741
Target Start/End: Original strand, 8933549 - 8933913
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||||| |     
T  8933549 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattttcaaagaaaagttatattacttgaatgattc----aatgcttgatt- 8933643  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa---- 566  Q
               ||||       |||||||||  ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||||||||        
T  8933644 -----------cttg-------caaaacacttagtggtgagccttatttatactactctaggaaggttctacattacaaactagaattatctagaaacat 8933725  T
Q  567 -----acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgc------ttatttagt- 654  Q
         ||||||||| | ||||| | |||||||||||||| ||||  ||||||||||||||||||  | |||| || ||||||||      |||||||||     
T  8933726 tgattacaaagaaaggcctagaaacatggatactctagttcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagta 8933825  T
Q  655 -agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
     |||||||| |||| ||||||||||||| ||||||| |||||||||| || || || |||||| || |||| | ||||| ||||||||    
T  8933826 gagtgtctaatagcttccttattattccatagtattttagagacttccatatttttctttagttttttagaaatttccatattattct 8933913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 371 - 569
Target Start/End: Complemental strand, 10909292 - 10909108
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaattaatgcttgact 469  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||| |    
T  10909292 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattc----aatgcttgatt 10909197  T
Q  470 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
     |           |||| | |||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  10909196 ct-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 10909108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 370 - 569
Target Start/End: Complemental strand, 10911536 - 10911352
Alignment:
Q  370 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 469  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |    
T  10911536 ttggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatt 10911441  T
Q  470 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
     |           |||| | |||| |||||||  ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  10911440 ct-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaagggtctacattacaaactagaaatatctagaaaca 10911352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 371 - 569
Target Start/End: Complemental strand, 13011881 - 13011698
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    ||||||||| |     
T  13011881 tggctcaggaacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattc----aatgcttgattc 13011786  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    |           |||| | || | |||||||  ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  13011785 t-----------ttgaatgtgtctaaacacttagtggtgagccttatttatactactctaggaaggctctacattaaaaactaaaaatatctagaaaca 13011698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 492 - 589
Target Start/End: Complemental strand, 29833949 - 29833852
Alignment:
Q  492 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatg 589  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  29833949 ccaaaacactaggtagtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatg 29833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 371 - 457
Target Start/End: Complemental strand, 29834046 - 29833960
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29834046 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaaggattcaat 29833960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 371 - 572
Target Start/End: Original strand, 2409957 - 2410136
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaattaatgcttgact 469  Q
    ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||  |||||||| ||||||| |||              |    
T  2409957 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctataatattctcaaagaaaatattatattatttgaatgtttc--------------t 2410042  T
Q  470 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    ||||||||      |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  2410043 atgcttga------tga---tgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaattagcaatatctagaaaca 2410133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 647 - 744
Target Start/End: Original strand, 2416660 - 2416758
Alignment:
Q  647 tatttagtagtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttct-agagacttccacattattctctg 744  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||| | |||| |||| |||||||||||||||||||||||    
T  2416660 tatttagtagtatctagtagcttccttattattccctagtattctagagagttctatattattctgtagtcttctgagagacttccacattattctctg 2416758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 487 - 646
Target Start/End: Complemental strand, 18353894 - 18353733
Alignment:
Q  487 gtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaaga--aaagtctagag 584  Q
    ||||||||||||||| || |||||||| || |||||||||||||| || ||||  ||||| ||| |||||| |||||||||||  ||  | |    | ||    
T  18353894 gtatgccaaaacacttggaggtgagccctaattatactactctagtaatgctccacattacaaaatagaaagatctagaaacattgattagaaataaaag 18353795  T
Q  585 atatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgct 646  Q
    | |||||||||||||| ||||  ||||||||||||||||||||  |||| || |||||||||    
T  18353794 acatggatactctagttcatatgactagaaggatctagaaaagataagattttcctagtgct 18353733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 659 - 730
Target Start/End: Original strand, 419213 - 419284
Alignment:
Q  659 tctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttc 730  Q
    ||||||||| ||||||||||||  ||  ||| |||||||||| || ||||| ||||||||||||||||||||    
T  419213 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 419284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 371 - 741
Target Start/End: Complemental strand, 45162364 - 45162007
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||  |    
T  45162364 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat----gtttgatga 45162269  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 570  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  45162268 tgcttgagtat---------gccaaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatctagaaacaa 45162178  T
Q  571 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 670  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |     
T  45162177 agaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttagtagtgtctagtagcttt 45162078  T
Q  671 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    |||||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||| ||||||||    
T  45162077 cttattattccctagtattctaaagacttctatattattctttagtcttctagagacttccatattattct 45162007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 370 - 741
Target Start/End: Original strand, 42468438 - 42468795
Alignment:
Q  370 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 469  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    ||||||      
T  42468438 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaat----gcttgatg 42468533  T
Q  470 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    |||||| ||||||          ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42468534 atgcttcagtatc----------caaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaaca 42468623  T
Q  570 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 669  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |    
T  42468624 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagctt 42468723  T
Q  670 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    ||||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  42468724 ccttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 42468795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 373 - 741
Target Start/End: Complemental strand, 45167254 - 45166899
Alignment:
Q  373 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgactatg 472  Q
    ||||| |||||||||||||| ||  |||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    | ||||  |||    
T  45167254 gctcatggacaaaaggaaagttaccgaaaatagagaaacactctaatattcttaaaaaaaagttatattatttgaatgattcaat----gtttgatgatg 45167159  T
Q  473 cttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaag 572  Q
    |||||||||         ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||    
T  45167158 cttgagtat---------gccaaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatctagaaacaaag 45167068  T
Q  573 aaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatcct 672  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  45167067 aaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttagtagtgtctagtagcttcct 45166968  T
Q  673 tattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    |||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||| ||||||||    
T  45166967 tattattccctagtattctaaagacttctatattattctttagtcttctagagacttccatattattct 45166899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 371 - 741
Target Start/End: Original strand, 42470768 - 42471124
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    ||||||  |    
T  42470768 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaat----gcttgatga 42470863  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 570  Q
    ||||| ||||||          ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42470864 tgcttcagtatc----------caaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 42470953  T
Q  571 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 670  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  42470954 agaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttc 42471053  T
Q  671 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    |||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  42471054 cttattattcccaagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 42471124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 492 - 709
Target Start/End: Original strand, 50855868 - 50856085
Alignment:
Q  492 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatgga 591  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  50855868 ccaaaacactaggtggtgaaccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatgga 50855967  T
Q  592 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattct 691  Q
    |||||| ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  50855968 tactctggtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccatagtattct 50856067  T
Q  692 agagacttctattttatt 709  Q
    ||||||||| || |||||    
T  50856068 agagacttccatattatt 50856085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 371 - 642
Target Start/End: Original strand, 19429076 - 19429334
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagt-tatattacttgaatgattcaattaatgcttgact 469  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||                
T  19429076 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagtatatattacttgaatgattcaat------------ 19429163  T
Q  470 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
      ||||||||||||||| |||  | ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||    
T  19429164 --gcttgagtatcttgaatatatctaaacacttggtggtgagccttatttatactactctaggtaggctctccattacaaactagaaatatctataaaca 19429261  T
Q  570 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctag 642  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19429262 aagaaaagtctagagatatgaatactctagtacataaaactagaaggatctagaaaagtcaagacttccctag 19429334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 371 - 569
Target Start/End: Complemental strand, 13774336 - 13774151
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||  |    
T  13774336 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatga 13774241  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    ||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  13774240 tg---------cttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 13774151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 495 - 697
Target Start/End: Complemental strand, 8739467 - 8739264
Alignment:
Q  495 aaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggatac 594  Q
    ||||||| |||||| |||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |    
T  8739467 aaacacttggtggtaagccttgtttatacaactctaggaaggctctacattacaaactagaaatatctagaaacaaagaaaaatctagagatatggatgc 8739368  T
Q  595 tctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta--tttagtagtgtctagtagcatccttattattccctagtattcta 692  Q
    |||||| ||||  ||||||||||||||||||  | |||| ||||||||||| ||  |||||| |||| ||||||| ||||||||||||  ||||||||||    
T  8739367 tctagttcatatgactagaaggatctagaaacattaagatttccctagtgcataattttagt-gtgtatagtagcttccttattattcattagtattcta 8739269  T
Q  693 gagac 697  Q
    |||||    
T  8739268 gagac 8739264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 374 - 569
Target Start/End: Complemental strand, 13776630 - 13776449
Alignment:
Q  374 ctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaattaatgcttgactatg 472  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||| | |     
T  13776630 ctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattc----aatgcttgattct- 13776536  T
Q  473 cttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
              |||| | |||| |||||||  | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  13776535 ----------ttgaatgtgcctaaacacttagcggtgagccttatttatactactctaggaaggctctgcattacaaactagaaatatctagaaaca 13776449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 371 - 457
Target Start/End: Original strand, 50855771 - 50855857
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  50855771 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcgaggaaaagttatattacttgaatgattcaat 50855857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 633
Target Start/End: Complemental strand, 43179710 - 43179575
Alignment:
Q  507 gtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca---------aagaaaagtctagagatatggatactct 597  Q
    |||||||| |||||||||||||||| ||  |||| ||||| |||||||||||||||| |||||         ||||||||| |||||| |||||||||||    
T  43179710 gtgagcctaatttatactactctagaaaaactctgcattacaaactagaaatatctacaaacattgattacaaagaaaagtatagagacatggatactct 43179611  T
Q  598 agtacataaaactagaaggatctagaaaagtcaaga 633  Q
    ||| ||||  |||||||||||| | |||||| ||||    
T  43179610 agttcatatgactagaaggatccaaaaaagttaaga 43179575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 628
Target Start/End: Original strand, 24908156 - 24908298
Alignment:
Q  494 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca--------aagaaaagtctagaga 585  Q
    |||||||| |||||||| || |||||||||||||||||||||| ||  | ||| ||| |||||| || ||||| ||        |||||||||||| |||    
T  24908156 aaaacacttggtggtgaaccctatttatactactctaggaaggttccacgttacaaagtagaaagatgtagaagcatttattacaagaaaagtctaaaga 24908255  T
Q  586 tatggatactctagtacataaaactagaaggatctagaaaagt 628  Q
    |||||||||| |||| ||||  |||| || || ||||||||||    
T  24908256 tatggatactttagttcatatgactaaaaagacctagaaaagt 24908298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 8739562 - 8739501
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 432  Q
    ||||||||||| ||||||||||  |||||||||  |||||| ||||||| ||||||| ||||    
T  8739562 tggctcagggataaaaggaaagaaagagaaaataaagaaactctctaatgttctcaaggaaa 8739501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 371 - 740
Target Start/End: Complemental strand, 31487069 - 31486712
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgact 469  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||                
T  31487069 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat------------ 31486982  T
Q  470 atgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 568  Q
      |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  31486981 --gcttgattatcttgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctggaaac 31486884  T
Q  569 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagca 668  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  31486883 aaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagct 31486784  T
Q  669 tccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 740  Q
    ||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||||||    
T  31486783 tccttattattccctagtattctagagacttctatattattctctagtcttctagaggcttccacattattc 31486712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 369 - 740
Target Start/End: Complemental strand, 31489355 - 31488996
Alignment:
Q  369 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttga 467  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||              
T  31489355 tttggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat---------- 31489266  T
Q  468 ctatgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa 566  Q
        |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||    
T  31489265 ----gcttgattatcttgagtatgccaaaacacttaggtggtgagccttatttatactactttaggaaggctctccattacaaactagaaatatctggaa 31489170  T
Q  567 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtag 666  Q
    ||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  31489169 acaaagaaaagtccagagatatggatactctagtacataagcttagaaggatctagaaaagctaagacttccctagtgcttatttagtagtgtctagtag 31489070  T
Q  667 catccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 740  Q
    | ||||||||||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||||||    
T  31489069 cttccttattattccctagtattctagagacttctatattattctttagtcttttagagacttccacattattc 31488996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 482 - 739
Target Start/End: Complemental strand, 29802067 - 29801805
Alignment:
Q  482 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtcta 581  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||||||    
T  29802067 cttgactatgcctaaacacttggtggtgagccttatttatactactctaggaagactccccattacaaactagaaatatctacaaacaaagaaaagtcta 29801968  T
Q  582 gagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta--tttagtagtgtctagtagc----atccttat 675  Q
    ||||||||||| || |||| ||||  ||||||||||| ||||||  | |||| ||  | ||||||||  ||||| |||||||||||||     |||||||    
T  29801967 gagatatggatgctatagttcatatgactagaaggatttagaaacattaagatttttccagtgcttaattttag-agtgtctagtagctagattccttat 29801869  T
Q  676 tattccctagtattctagagacttctattttattatttagtgttctagagacttccacattatt 739  Q
    |||||  |||||||||||| |||||  | ||||| ||| |||||||||||||||||| ||||||    
T  29801868 tattctttagtattctagatacttccctattattctttggtgttctagagacttccatattatt 29801805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 371 - 569
Target Start/End: Original strand, 42275556 - 42275739
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    ||| ||||| |     
T  42275556 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatacttgattc 42275651  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    |           |||| | |||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  42275652 t-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 42275739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 371 - 569
Target Start/End: Original strand, 42277782 - 42277965
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |     
T  42277782 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgattc 42277877  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    |           |||| | |||| |||||||  |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  42277878 t-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaagactctacattacaaactagaaatatctagaaaca 42277965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 489 - 741
Target Start/End: Original strand, 34576694 - 34576969
Alignment:
Q  489 atgccaaaacactaggtggtgagccttatttatactactct-aggaaggctctccattataaactagaaatatctagaa---------acaaagaaaagt 578  Q
    ||||| ||||||| | ||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||||||         ||||||||||||    
T  34576694 atgcctaaacacttgatggtgagccttatttatactaatcttaggaaggctctacattacaaactagaaatatctagaaacattgattacaaagaaaagt 34576793  T
Q  579 ctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgc-----------ttatttagt--agtgtctagta 665  Q
    ||||||| ||| |||||||||| ||||  ||||||||||||||||||||| |||| ||| |||||||           |||||||||  |||||| ||||    
T  34576794 ctagagacatgaatactctagttcatatgactagaaggatctagaaaagttaagatttctctagtgcgtaattttattttatttagtagagtgtccagta 34576893  T
Q  666 gcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    || ||||  ||||||  ||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  34576894 gcttcctcgttattctttagtattttagagacttccatattattctttagtgttctagagacttccacattattct 34576969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 370 - 725
Target Start/End: Complemental strand, 23860188 - 23859825
Alignment:
Q  370 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 469  Q
    |||||||||||||||||||||| | | ||||||| ||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||                
T  23860188 ttggctcagggacaaaaggaaaagcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaat------------ 23860101  T
Q  470 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa--- 566  Q
      ||||||||||||||| ||| |  ||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||       
T  23860100 --gcttgagtatcttgaatatacgtaaacacttggtggtgagccttatttatactactctaggaaggctctacattacaaactagaattatctagaaata 23860003  T
Q  567 ------acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtg-----------cttat 649  Q
          ||||||||| | ||||| | ||| |||||||||| ||||| ||||||||||||||||||||  |||| ||| ||||||            ||||    
T  23860002 ttgattacaaagaaaggcctagaaacatgcatactctagttcataagactagaaggatctagaaaagctaagatttctctagtgtctaattttattttat 23859903  T
Q  650 ttagtag--tgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagag 725  Q
    |||||||  ||| ||||||| ||||||||||| | |||||||||||||||| | || ||||| |||||||||||||||    
T  23859902 ttagtagaatgtttagtagcttccttattatttcatagtattctagagactcccatattattctttagtgttctagag 23859825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 371 - 457
Target Start/End: Original strand, 5164151 - 5164237
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5164151 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaat 5164237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 8995076 - 8995156
Alignment:
Q  377 agggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8995076 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagttatattacttgaatgattcaat 8995156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 15730093 - 15730013
Alignment:
Q  377 agggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  15730093 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaataaaagttatattacttgaatgattcaat 15730013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 371 - 433
Target Start/End: Original strand, 39816089 - 39816151
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaa 433  Q
    ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  39816089 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 39816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 34576612 - 34576665
Alignment:
Q  379 ggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 432  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  34576612 ggacaaaaggtaaggtagagaaaatagagaaactctctaatattctcaaagaaa 34576665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 493 - 534
Target Start/End: Original strand, 8995169 - 8995210
Alignment:
Q  493 caaaacactaggtggtgagccttatttatactactctaggaa 534  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  8995169 caaaacacttggtggagagccttatttatactactctaggaa 8995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 371 - 739
Target Start/End: Original strand, 11852175 - 11852519
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |    
T  11852175 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattca----atgcttgacga 11852270  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 570  Q
    |                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  11852271 t--------------------ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaa 11852350  T
Q  571 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 670  Q
    | ||||||||||||||||||||||||||||||||||  ||||||||  |||||||||| | |||||||||||||||||||||||||||||||||||| ||    
T  11852351 ataaaagtctagagatatggatactctagtacataagcctagaaggtcctagaaaagttatgacttccctagtgcttatttagtagtgtctagtagcttc 11852450  T
Q  671 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattatt 739  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||    
T  11852451 cttattattccctagtattctagagacttctatattattctttagtcttctagagacttcctcattatt 11852519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 492 - 740
Target Start/End: Original strand, 23164347 - 23164595
Alignment:
Q  492 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatgga 591  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  23164347 ccaaaacactaggtggtgggccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatgga 23164446  T
Q  592 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattct 691  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  23164447 tactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgtttatttagtagtgtctagtagcttccttattattccctagtattct 23164546  T
Q  692 agagacttctattttattatttagtgttctagagacttccacattattc 740  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  23164547 agagacttctatattattctttagtcttctagagacttccacattattc 23164595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 493 - 740
Target Start/End: Complemental strand, 37207948 - 37207701
Alignment:
Q  493 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggat 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  37207948 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggat 37207849  T
Q  593 actctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattcta 692  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37207848 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattcta 37207749  T
Q  693 gagacttctattttattatttagtgttctagagacttccacattattc 740  Q
     |||||||||| ||||| |||||| |||||||||||||||||||||||    
T  37207748 cagacttctatattattctttagtcttctagagacttccacattattc 37207701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 492 - 740
Target Start/End: Original strand, 11850014 - 11850262
Alignment:
Q  492 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatgga 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  11850014 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatgga 11850113  T
Q  592 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattct 691  Q
    |||||| ||||||||  |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |    
T  11850114 tactcttgtacataagcctagaaggatctagaaaatttaagacttccctagtgcttatttagtagtgtctagtagctttcttattattccctagtatttt 11850213  T
Q  692 agagacttctattttattatttagtgttctagagacttccacattattc 740  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  11850214 agagacttctatattattctttagtcttctagagacttccacattattc 11850262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 492 - 740
Target Start/End: Complemental strand, 22600989 - 22600741
Alignment:
Q  492 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatgga 591  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  22600989 ccaaaacactaggtggtgagccttatttatactactttagcaagactctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatgga 22600890  T
Q  592 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattct 691  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||    
T  22600889 tactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtcaagtagctttcttattattccatagtattct 22600790  T
Q  692 agagacttctattttattatttagtgttctagagacttccacattattc 740  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||    
T  22600789 agagacttctatattattatttagtcttctagagacttccacattattc 22600741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 493 - 636
Target Start/End: Complemental strand, 37215539 - 37215396
Alignment:
Q  493 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggat 592  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| |||||| ||||||    
T  37215539 caaaacactatgtggtgagccttatttatactactctaggaaggctcttcattaccaactagaaatatctagaaacaaagaaaagtttagagacatggat 37215440  T
Q  593 actctagtacataaaactagaaggatctagaaaagtcaagactt 636  Q
    ||||||||| ||||  |||||||||||||||||||| |||||||    
T  37215439 actctagtatataagcctagaaggatctagaaaagttaagactt 37215396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 493 - 741
Target Start/End: Original strand, 1779316 - 1779581
Alignment:
Q  493 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca---------aagaaaagtctaga 583  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||         |||||| | |||||    
T  1779316 caaaacacttgttggtgagccttatttataccactctaggaaggctctacattacaaactagaattatctagaaacattgattacaaagaaaggcctaga 1779415  T
Q  584 gatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt------atttagt--agtgtctagtagcatccttat 675  Q
     | |||||||||||||| ||||  ||||||||||||||||||  | |||| ||  |||||||||      |||||||  ||||||||||||| |||||||    
T  1779416 aacatggatactctagttcatatgactagaaggatctagaaacattaagatttttctagtgctttattttatttagtggagtgtctagtagcttccttat 1779515  T
Q  676 tattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    |||||| ||||||| ||||||||||||| ||||| |||||| ||||||| ||||||| ||||||||    
T  1779516 tattccatagtattttagagacttctatattattctttagttttctagaaacttccatattattct 1779581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 370 - 457
Target Start/End: Original strand, 11849916 - 11850003
Alignment:
Q  370 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11849916 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattcaat 11850003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 371 - 457
Target Start/End: Original strand, 23164254 - 23164340
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23164254 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 23164340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 370 - 457
Target Start/End: Complemental strand, 22601088 - 22601000
Alignment:
Q  370 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaat 457  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||    
T  22601088 ttggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaat 22601000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 371 - 457
Target Start/End: Complemental strand, 37215638 - 37215551
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaat 457  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||    
T  37215638 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaat 37215551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 371 - 457
Target Start/End: Original strand, 1779222 - 1779303
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    |||||||||||||||||||||     ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1779222 tggctcagggacaaaaggaaa-----agaaaatagaggaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 1779303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 371 - 449
Target Start/End: Complemental strand, 21743797 - 21743719
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaat 449  Q
    |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||| ||||||    
T  21743797 tggcccagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaagtttatattatttgaat 21743719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 371 - 442
Target Start/End: Complemental strand, 37208070 - 37207998
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatatta 442  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||    
T  37208070 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcgaagaaaagattatatta 37207998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 482 - 569
Target Start/End: Complemental strand, 21743709 - 21743622
Alignment:
Q  482 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    |||||||||||| || |||| ||||||||  |||||||||||||||||||||||||||| || || |||||| ||||||||| |||||    
T  21743709 cttgagtatgcctaaccacttggtggtgaatcttatttatactactctaggaaggctctacactacaaactaaaaatatctaaaaaca 21743622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 530 - 741
Target Start/End: Original strand, 1779587 - 1779815
Alignment:
Q  530 aggaaggctctccattataaactagaaatatctagaaaca---------aagaaaagtctagagatatggatactctagtacataaaactagaaggatct 620  Q
    ||||||||| | ||||| ||||||||||||||||||||||         | |||| | ||||||||| ||||| |||||| ||||  |||||||||||||    
T  1779587 aggaaggctttacattacaaactagaaatatctagaaacattgattacaaggaaaggcctagagatagggatattctagttcatatgactagaaggatct 1779686  T
Q  621 agaaaagtcaagacttccctagtgctt-attt-----agtag--tgtctagtagcatccttattattccctagtattctagagacttctattttattatt 712  Q
    |||||  | |||| |||||||| |||| ||||     |||||  ||||||||||| ||   |||||||  |||||||||||||||||| || ||||| ||    
T  1779687 agaaacattaagatttccctagcgctttattttatccagtagaatgtctagtagcttcgacattattctttagtattctagagacttccatattattctt 1779786  T
Q  713 tagtgttctagagacttccacattattct 741  Q
    ||||||| | |||||||||||||| ||||    
T  1779787 tagtgttatggagacttccacatttttct 1779815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 15469258 - 15469197
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 432  Q
    ||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  15469258 tggctcagggacaaaaggaaaggtaaaaaaaatagagaaactctctaatattctcaaagaaa 15469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 535
Target Start/End: Original strand, 1779181 - 1779221
Alignment:
Q  495 aaacactaggtggtgagccttatttatactactctaggaag 535  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  1779181 aaacacttggtggtgagccttatttatactactctaggaag 1779221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 674 - 741
Target Start/End: Complemental strand, 37207707 - 37207640
Alignment:
Q  674 attattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    |||||||||||||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  37207707 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattct 37207640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 167; Significance: 5e-89; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 371 - 606
Target Start/End: Complemental strand, 1801 - 1579
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    ||||||  |    
T  1801 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatatcctcaaagaaaagttatattacttgaatgattcaat----gcttgatga 1706  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 570  Q
    |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1705 tgcttgagtat---------gccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 1615  T
Q  571 agaaaagtctagagatatggatactctagtacataa 606  Q
    ||||||||||||||||||||||||||||||||||||    
T  1614 agaaaagtctagagatatggatactctagtacataa 1579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 371 - 569
Target Start/End: Complemental strand, 4531020 - 4530835
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 470  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||  |    
T  4531020 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatga 4530925  T
Q  471 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 569  Q
    ||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  4530924 tg---------cttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 4530835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 370 - 563
Target Start/End: Complemental strand, 4533318 - 4533138
Alignment:
Q  370 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 469  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||      
T  4533318 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatg 4533223  T
Q  470 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatcta 563  Q
    |||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  4533222 atg---------cttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatcta 4533138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 495 - 741
Target Start/End: Original strand, 18966221 - 18966480
Alignment:
Q  495 aaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggatac 594  Q
    ||||||| ||||||||||||||||||||||||||||||||| | |||||| | | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  18966221 aaacacttggtggtgagccttatttatactactctaggaagacactccatgacacactagaaatatctagaaaccaagaaaagtcaagagatatggatac 18966320  T
Q  595 tctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt-----------atttagt--agtgtctagtagcatccttattattcc 681  Q
    |||||||| ||  ||||||||||||||||||  | |||| || ||||||||||           |||||||  ||| |||||||||  ||||||||||      
T  18966321 tctagtacgtatgactagaaggatctagaaacattaagattttcctagtgcttaattttatttcatttagtagagtatctagtagctaccttattattat 18966420  T
Q  682 ctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    |||||||||||||||||||  | ||||| ||| |||||||||||||||||||||||||||    
T  18966421 ctagtattctagagacttccctattattctttggtgttctagagacttccacattattct 18966480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 644
Target Start/End: Complemental strand, 1701179 - 1701104
Alignment:
Q  569 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtg 644  Q
    ||||||||| ||||| ||||||||| |||| | ||||  ||||||||||||||||||||| |||| ||||||||||    
T  1701179 aaagaaaagcctagaaatatggataatctaattcatatgactagaaggatctagaaaagttaagatttccctagtg 1701104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 626
Target Start/End: Complemental strand, 8535578 - 8535522
Alignment:
Q  570 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaa 626  Q
    |||||||||||||||||||||||||| ||||  |||  |||||||||||||| ||||    
T  8535578 aagaaaagtctagagatatggatactttagtttatatgactagaaggatctaaaaaa 8535522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 99; Significance: 2e-48; HSPs: 4)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 482 - 648
Target Start/End: Complemental strand, 29426 - 29261
Alignment:
Q  482 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtcta 581  Q
    |||||||||||| |  |||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||    
T  29426 cttgagtatgcctacgcacttggtggtgagccttatttatactactctaggaagactctccattacaaactaaaaatatctagaaac-aagaaaagtcta 29328  T
Q  582 gagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta 648  Q
    |||||||||||  |||||||||||  ||||||||||||||||||  | |||| ||||||||||||||    
T  29327 gagatatggatgttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 29261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 482 - 648
Target Start/End: Complemental strand, 31741 - 31574
Alignment:
Q  482 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtcta 581  Q
    |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||    
T  31741 cttgagtatgcctacacacttggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctaaaaac-aagaaaagtcta 31643  T
Q  582 gag--atatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta 648  Q
    |||  ||||||||  |||||||||||  ||||||||||||||||||  | |||| ||||||||||||||    
T  31642 gagatatatggatgttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 31574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 29514 - 29453
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 432  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  29514 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 29453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 31829 - 31768
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 432  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  31829 tggctcaaggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 31768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 371 - 457
Target Start/End: Complemental strand, 88531 - 88445
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 457  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  88531 tggctcagggacaaaaggaaaggtagagaaaatagagaaagactctaatattctcaaagaaaagttatattacttgaatgattcaat 88445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 693 - 741
Target Start/End: Complemental strand, 73153 - 73105
Alignment:
Q  693 gagacttctattttattatttagtgttctagagacttccacattattct 741  Q
    ||||||||||| ||||| |||||| ||||||||||||||| ||||||||    
T  73153 gagacttctatattattctttagtcttctagagacttccatattattct 73105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 371 - 457
Target Start/End: Complemental strand, 140 - 53
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaat 457  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  140 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactttaatattctcaaacgaaaagttatattacttgaatgattcaat 53  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 371 - 449
Target Start/End: Original strand, 3707 - 3785
Alignment:
Q  371 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaat 449  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||  |||||||| ||||||    
T  3707 tggctcagggacaaaaggaaaggtagagaaaatagagtaactctctaatattctcaaagaaagtttatattatttgaat 3785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 503 - 709
Target Start/End: Complemental strand, 21199374 - 21199149
Alignment:
Q  503 ggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa---------acaaagaaaagtctagag--atatgga 591  Q
    |||||||| ||||||||||| ||||| ||||||||| | ||||| |||||||||||||||||||         |||| |||| | ||||||  |||||||    
T  21199374 ggtggtgaaccttatttatagtactccaggaaggctgtacattacaaactagaaatatctagaaacattgattacaatgaaaggcctagagacatatgga 21199275  T
Q  592 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgc------ttatttagt--agtgtctagtagcatccttattattccct 683  Q
    ||||| ||| ||||  ||||||||||||||||||  | |||| ||  |||||||      |||||||||  ||||| ||||||| ||||||||||||| |    
T  21199274 tactccagttcatatgactagaaggatctagaaacattaagatttaactagtgctttattttatttagtagagtgtatagtagcttccttattattccat 21199175  T
Q  684 agtattctagagacttctattttatt 709  Q
    ||||||||||||||||| || |||||    
T  21199174 agtattctagagacttccatattatt 21199149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 373 - 432
Target Start/End: Complemental strand, 20642359 - 20642300
Alignment:
Q  373 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 432  Q
    |||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||||    
T  20642359 gctcagggacaaaatgaaaggtagagaaaatagagaaattctctaatattctcaaagaaa 20642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 659 - 730
Target Start/End: Complemental strand, 11358 - 11287
Alignment:
Q  659 tctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttc 730  Q
    ||||||||| ||||||||||||  ||  ||| |||||||||| || ||||| ||||||||||||||||||||    
T  11358 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 11287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 432
Target Start/End: Complemental strand, 64144 - 64082
Alignment:
Q  368 atttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 432  Q
    |||||| |||| ||||||| |||||||| ||||||| ||||||| ||  ||||||||||||||||    
T  64144 atttggatcagagacaaaatgaaaggtaaagaaaatagagaaaccct--aatattctcaaagaaa 64082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 432
Target Start/End: Complemental strand, 71476 - 71414
Alignment:
Q  368 atttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 432  Q
    |||||| |||| ||||||| |||||||| ||||||| ||||||| ||  ||||||||||||||||    
T  71476 atttggatcagagacaaaatgaaaggtaaagaaaatagagaaaccct--aatattctcaaagaaa 71414  T

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