View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9410_low_8 (Length: 486)

Name: NF9410_low_8
Description: NF9410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9410_low_8
NF9410_low_8
[»] chr3 (18 HSPs)
chr3 (194-420)||(46551500-46551726)
chr3 (33-103)||(31342095-31342165)
chr3 (37-103)||(20286992-20287058)
chr3 (139-196)||(22894004-22894061)
chr3 (134-189)||(11512390-11512445)
chr3 (136-189)||(31342010-31342063)
chr3 (58-99)||(11512479-11512520)
chr3 (58-103)||(22893925-22893970)
chr3 (42-89)||(22894001-22894049)
chr3 (140-179)||(20496496-20496535)
chr3 (139-189)||(29081704-29081754)
chr3 (374-420)||(37735160-37735206)
chr3 (371-420)||(52965197-52965246)
chr3 (143-179)||(20287013-20287048)
chr3 (139-179)||(28309088-28309128)
chr3 (42-89)||(29081701-29081749)
chr3 (143-179)||(31342116-31342151)
chr3 (34-89)||(32385358-32385414)
[»] chr2 (21 HSPs)
chr2 (33-103)||(7755424-7755494)
chr2 (134-189)||(7755339-7755394)
chr2 (371-420)||(5703190-5703239)
chr2 (58-103)||(12918621-12918666)
chr2 (58-103)||(15562292-15562337)
chr2 (58-103)||(39819151-39819196)
chr2 (135-179)||(13421790-13421834)
chr2 (135-179)||(15562217-15562261)
chr2 (371-420)||(17205701-17205750)
chr2 (371-414)||(13369239-13369282)
chr2 (134-168)||(12918557-12918591)
chr2 (371-420)||(20564692-20564742)
chr2 (134-168)||(39819087-39819121)
chr2 (42-86)||(13421794-13421839)
chr2 (374-419)||(20463939-20463984)
chr2 (375-416)||(43476658-43476699)
chr2 (42-81)||(5095758-5095798)
chr2 (42-89)||(7755344-7755392)
chr2 (32-68)||(12918665-12918701)
chr2 (139-179)||(34563353-34563393)
chr2 (32-68)||(39819195-39819231)
[»] chr4 (24 HSPs)
chr4 (45-103)||(6607407-6607465)
chr4 (135-179)||(53261103-53261147)
chr4 (58-103)||(6608437-6608482)
chr4 (139-180)||(54223565-54223606)
chr4 (139-179)||(30023650-30023690)
chr4 (372-419)||(39068050-39068097)
chr4 (61-103)||(31012215-31012257)
chr4 (139-189)||(41306713-41306763)
chr4 (370-420)||(24221262-24221312)
chr4 (61-103)||(31846819-31846861)
chr4 (43-103)||(30023633-30023694)
chr4 (135-167)||(31012152-31012184)
chr4 (139-187)||(42756291-42756339)
chr4 (371-414)||(26687784-26687827)
chr4 (139-178)||(46321359-46321398)
chr4 (135-164)||(2254564-2254593)
chr4 (371-420)||(33616139-33616188)
chr4 (134-179)||(38324932-38324977)
chr4 (139-168)||(46321440-46321469)
chr4 (143-179)||(6607409-6607444)
chr4 (134-166)||(6607495-6607527)
chr4 (134-166)||(9712952-9712984)
chr4 (139-179)||(36273062-36273102)
chr4 (139-187)||(40789184-40789232)
[»] chr1 (24 HSPs)
chr1 (33-104)||(15928073-15928144)
chr1 (134-189)||(28739413-28739468)
chr1 (134-179)||(50754737-50754782)
chr1 (32-103)||(9379906-9379986)
chr1 (139-179)||(10449461-10449501)
chr1 (33-89)||(10449447-10449504)
chr1 (58-103)||(28739338-28739383)
chr1 (58-103)||(50754812-50754857)
chr1 (138-189)||(45085931-45085981)
chr1 (61-103)||(9884929-9884971)
chr1 (58-100)||(28045410-28045452)
chr1 (371-420)||(32829983-32830032)
chr1 (67-103)||(6539593-6539629)
chr1 (139-179)||(44938808-44938848)
chr1 (58-89)||(35251201-35251232)
chr1 (139-168)||(12440975-12441004)
chr1 (139-176)||(28810065-28810102)
chr1 (138-179)||(44291061-44291102)
chr1 (157-189)||(718985-719017)
chr1 (157-189)||(10449579-10449611)
chr1 (371-419)||(15837209-15837256)
chr1 (32-87)||(44801750-44801806)
chr1 (139-175)||(44801769-44801805)
chr1 (157-189)||(44801884-44801916)
[»] chr7 (13 HSPs)
chr7 (134-189)||(7211863-7211918)
chr7 (134-189)||(17272702-17272757)
chr7 (58-103)||(17272787-17272832)
chr7 (139-189)||(32315710-32315760)
chr7 (134-179)||(29681778-29681823)
chr7 (58-103)||(29681852-29681897)
chr7 (134-189)||(46282871-46282926)
chr7 (135-178)||(7211999-7212042)
chr7 (35-89)||(25099252-25099306)
chr7 (139-189)||(25099354-25099404)
chr7 (58-87)||(43500085-43500114)
chr7 (32-64)||(43500117-43500149)
chr7 (372-420)||(44523895-44523943)
[»] chr6 (10 HSPs)
chr6 (139-186)||(369524-369571)
chr6 (134-179)||(2543843-2543888)
chr6 (58-103)||(2543769-2543814)
chr6 (58-103)||(11448145-11448190)
chr6 (141-179)||(28581745-28581783)
chr6 (33-89)||(369521-369578)
chr6 (371-420)||(9606518-9606567)
chr6 (139-179)||(16193834-16193874)
chr6 (32-98)||(16193822-16193889)
chr6 (134-166)||(178660-178692)
[»] chr5 (15 HSPs)
chr5 (371-420)||(4421846-4421895)
chr5 (58-104)||(5215594-5215640)
chr5 (135-189)||(9177946-9178000)
chr5 (139-177)||(42772070-42772108)
chr5 (139-189)||(22097488-22097538)
chr5 (135-189)||(25879406-25879460)
chr5 (61-103)||(29385313-29385355)
chr5 (58-103)||(19417533-19417577)
chr5 (139-179)||(12605660-12605700)
chr5 (134-193)||(5215670-5215729)
chr5 (371-418)||(6010451-6010498)
chr5 (141-179)||(23219389-23219427)
chr5 (134-168)||(29385385-29385419)
chr5 (139-168)||(7137665-7137694)
chr5 (139-175)||(896286-896322)
[»] chr8 (4 HSPs)
chr8 (371-420)||(44172185-44172234)
chr8 (135-179)||(45051339-45051383)
chr8 (139-180)||(4531848-4531889)
chr8 (370-418)||(24616859-24616907)
[»] scaffold1315 (1 HSPs)
scaffold1315 (139-179)||(1826-1866)
[»] scaffold1293 (1 HSPs)
scaffold1293 (139-179)||(205-245)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 194 - 420
Target Start/End: Original strand, 46551500 - 46551726
Alignment:
Q  194 tcatagagcactatgcattctcatatggtatggctgacactgtttgcaataaacatattgctcaacacaggtgtgaccgatgtggtcctttatgtttgga 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46551500 tcatagagcactatgcattctcatatggtatggctgacactgtttgcaataaacatattgctcaacacaggtgtgaccgatgtggtcctttatgtttgga 46551599  T
Q  294 ttagattatatatcatcgtttttattatgttgtctaagttggaatgaccttaatttcaagaaatggggaggaccacataggggtgttcatgggttgggtc 393  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  46551600 ttagattatatatcatcgtttttattatgttgtttaagttggaatgaccttaatttgaagaaatggagaggaccacaaaggggtgttcatgggttgggtc 46551699  T
Q  394 aactcagaaaattcggtcaaatccacc 420  Q
    ||  ||||||| |||||||||||||||    
T  46551700 aatccagaaaactcggtcaaatccacc 46551726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 31342165 - 31342095
Alignment:
Q  33 ggataatatttgggtgatattgtggttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31342165 ggataatatttgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaa 31342095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 20287058 - 20286992
Alignment:
Q  37 aatatttgggtgatattgtggttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20287058 aatatttgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaa 20286992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 22894004 - 22894061
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgctgccctca 196  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  22894004 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagtgctaccctca 22894061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 11512445 - 11512390
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  11512445 ccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgct 11512390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 31342063 - 31342010
Alignment:
Q  136 acatgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||| ||||    
T  31342063 acatgtgacattgtggttggccaatgtcaccaaccacaatgtcatccaaatgct 31342010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 11512520 - 11512479
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaaca 99  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  11512520 ttggtgacattaccaaccacaatgttacaagtgtgcaaaaca 11512479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 22893925 - 22893970
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||||||||||||||||||||||| | |||||||||||    
T  22893925 ttggtgacattaccaaccacaatgttacaagtgtacaaaacaacaa 22893970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 22894049 - 22894001
Alignment:
Q  42 ttgggtgatattgtggttggtgacatt-accaaccacaatgttacaagt 89  Q
    |||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  22894049 ttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagt 22894001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 20496535 - 20496496
Alignment:
Q  140 gtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  20496535 gtgacattgtgattggtcaatgtcaccgaccacaatgtca 20496496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 29081704 - 29081754
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    ||||||||||||||||  ||||||||||||||||||| |||  ||||||||    
T  29081704 tgtgacattgtggttgaccaatgtcaccaaccacaatatcacccaagtgct 29081754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 37735160 - 37735206
Alignment:
Q  374 gggtgttcatgggttgggtcaactcagaaaattcggtcaaatccacc 420  Q
    ||||||||||||||||||||||| ||||||||  ||||||| |||||    
T  37735160 gggtgttcatgggttgggtcaacccagaaaatctggtcaaacccacc 37735206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 52965197 - 52965246
Alignment:
Q  371 taggggtgttcatgggttgggtcaactcagaaaattcggtcaaatccacc 420  Q
    |||| |||||||||||||||||||||  ||||||| |||||||| |||||    
T  52965197 taggagtgttcatgggttgggtcaacctagaaaatccggtcaaacccacc 52965246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 20287013 - 20287048
Alignment:
Q  143 acattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    |||||||||||||| ||||||||||||||||||||||    
T  20287013 acattgtggttggt-aatgtcaccaaccacaatgtca 20287048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 28309128 - 28309088
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||| |||||||||| ||||||||| ||||||||||||||    
T  28309128 tgtgatattgtggttgatcaatgtcatcaaccacaatgtca 28309088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 29081749 - 29081701
Alignment:
Q  42 ttgggtgatattgtggttggtgacatt-accaaccacaatgttacaagt 89  Q
    |||||||||||||||||||||||||||   |||||||||||| ||||||    
T  29081749 ttgggtgatattgtggttggtgacattggtcaaccacaatgtcacaagt 29081701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 31342116 - 31342151
Alignment:
Q  143 acattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    |||||||||||||| ||||||||||||||||||||||    
T  31342116 acattgtggttggt-aatgtcaccaaccacaatgtca 31342151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 32385358 - 32385414
Alignment:
Q  34 gataatatttgggtgatattgtggttggtgacatt-accaaccacaatgttacaagt 89  Q
    |||||||||||||||| |||||| |||||||||||   |||||||||||| ||||||    
T  32385358 gataatatttgggtgacattgtgattggtgacattggtcaaccacaatgtgacaagt 32385414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 7755494 - 7755424
Alignment:
Q  33 ggataatatttgggtgatattgtggttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  7755494 ggataatatttgggtgacattgtggttggtgacattaccaatcacaatgttacaagtgtacaaaacaacaa 7755424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 7755394 - 7755339
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  7755394 ccacttgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgct 7755339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 5703239 - 5703190
Alignment:
Q  371 taggggtgttcatgggttgggtcaactcagaaaattcggtcaaatccacc 420  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  5703239 taggggtgttcatgggttgggtcaacccagaaaacccggtcaaatccacc 5703190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 12918666 - 12918621
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  12918666 ttggtgacattaccaaccacaatgttacaaatgtgcaaaacaacaa 12918621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 15562337 - 15562292
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||    
T  15562337 ttggtgacattaccaatcacaatgttacaagtgtgcaaaacaacaa 15562292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 39819196 - 39819151
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||    
T  39819196 ttggtgacattaccaaccacaatattacaagtgtgcaaaacaacaa 39819151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 13421790 - 13421834
Alignment:
Q  135 cacatgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||||| || ||||||||||||||||||||||||||||||||||    
T  13421790 cacatgtaacgttgtggttggtcaatgtcaccaaccacaatgtca 13421834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 15562261 - 15562217
Alignment:
Q  135 cacatgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||    
T  15562261 cacatgtgacattgtggttggccaatgtcatcaaccacaatgtca 15562217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 17205701 - 17205750
Alignment:
Q  371 taggggtgttcatgggttgggtcaactcagaaaattcggtcaaatccacc 420  Q
    |||||||||||||||||||||||||| |||||||| || ||||| |||||    
T  17205701 taggggtgttcatgggttgggtcaacccagaaaatccgatcaaacccacc 17205750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 414
Target Start/End: Original strand, 13369239 - 13369282
Alignment:
Q  371 taggggtgttcatgggttgggtcaactcagaaaattcggtcaaa 414  Q
    |||||||||||||||||||||||||| |||||||  ||||||||    
T  13369239 taggggtgttcatgggttgggtcaacccagaaaacccggtcaaa 13369282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 12918591 - 12918557
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaa 168  Q
    |||||||||||||||||||||| ||||||||||||    
T  12918591 ccacatgtgacattgtggttggccaatgtcaccaa 12918557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 20564692 - 20564742
Alignment:
Q  371 taggggtgttcatgggtt-gggtcaactcagaaaattcggtcaaatccacc 420  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||| |||||    
T  20564692 taggggtgttcataggtttgggtcaactcagaaaatccggtcaaacccacc 20564742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 39819121 - 39819087
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaa 168  Q
    |||||||||||||||||||||| ||||||||||||    
T  39819121 ccacatgtgacattgtggttggccaatgtcaccaa 39819087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 13421839 - 13421794
Alignment:
Q  42 ttgggtgatattgtggttggtgacatt-accaaccacaatgttaca 86  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||||    
T  13421839 ttgggtgacattgtggttggtgacattgaccaaccacaacgttaca 13421794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 20463939 - 20463984
Alignment:
Q  374 gggtgttcatgggttgggtcaactcagaaaattcggtcaaatccac 419  Q
    |||| |||||||||||||||||| |||||||| |||||||| ||||    
T  20463939 gggttttcatgggttgggtcaacccagaaaatccggtcaaacccac 20463984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 43476699 - 43476658
Alignment:
Q  375 ggtgttcatgggttgggtcaactcagaaaattcggtcaaatc 416  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||    
T  43476699 ggtgtacatgggttgggtcaactcaaaaaattcagtcaaatc 43476658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 5095758 - 5095798
Alignment:
Q  42 ttgggtgatattgtggttggtgacatta-ccaaccacaatg 81  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  5095758 ttgggtgatattgtggttggtgacattagacaaccacaatg 5095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 7755344 - 7755392
Alignment:
Q  42 ttgggtgatattgtggttggtgacatt-accaaccacaatgttacaagt 89  Q
    |||||||| ||||||||||||||||||  ||||||||||||| ||||||    
T  7755344 ttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagt 7755392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 12918701 - 12918665
Alignment:
Q  32 cggataatatttgggtgatattgtggttggtgacatt 68  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  12918701 cggataatacttgggtgacattgtggttggtgacatt 12918665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 34563353 - 34563393
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||||||||  |||||||||||||||||||||| ||||||    
T  34563353 tgtgacattgaagttggtcaatgtcaccaaccacgatgtca 34563393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 39819231 - 39819195
Alignment:
Q  32 cggataatatttgggtgatattgtggttggtgacatt 68  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  39819231 cggataatacttgggtgacattgtggttggtgacatt 39819195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 6607407 - 6607465
Alignment:
Q  45 ggtgatattgtggttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6607407 ggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaa 6607465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 53261147 - 53261103
Alignment:
Q  135 cacatgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  53261147 cacatgtgacattgtggttggtcaatgtcaccaaccacaatgtca 53261103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 6608482 - 6608437
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  6608482 ttggtgacattaccaaccacaatgttacaagtctgcaaaacaacaa 6608437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 54223606 - 54223565
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcat 180  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  54223606 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcat 54223565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 30023650 - 30023690
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30023650 tgtgacattgtggttggtcaatgtcaccaaccacaatgtca 30023690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 39068050 - 39068097
Alignment:
Q  372 aggggtgttcatgggttgggtcaactcagaaaattcggtcaaatccac 419  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  39068050 aggggtgttcatgggttgggtcaactcagaaaatccggtcaaacccac 39068097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 31012257 - 31012215
Alignment:
Q  61 gtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  31012257 gtgacattaccaaccacaatattacaagtatgcaaaacaacaa 31012215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 41306713 - 41306763
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    ||||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  41306713 tgtgacattatggttggtcaatatcaccaaccacaatgtcgttcaagtgct 41306763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 24221262 - 24221312
Alignment:
Q  370 ataggggtgttcatgggttgggtcaactcagaaaattcggtcaaatccacc 420  Q
    ||||||||||||||||||||||||||| || |||| ||||||||| |||||    
T  24221262 ataggggtgttcatgggttgggtcaacccacaaaactcggtcaaacccacc 24221312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 31846819 - 31846861
Alignment:
Q  61 gtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  31846819 gtgacattaccaaccaaaatgttacaagtgtgcaaaacaacaa 31846861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 30023694 - 30023633
Alignment:
Q  43 tgggtgatattgtggttggtgacatt-accaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    ||||||| |||||||||||||||||| |||||||||||||| |||||| | ||||| |||||    
T  30023694 tgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtacaaaaaaacaa 30023633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 31012184 - 31012152
Alignment:
Q  135 cacatgtgacattgtggttggtcaatgtcacca 167  Q
    |||||||||||||||||||||||||||||||||    
T  31012184 cacatgtgacattgtggttggtcaatgtcacca 31012152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 42756291 - 42756339
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtg 187  Q
    |||| ||||||||||| |||| ||||||||||||||||||| |||||||    
T  42756291 tgtggcattgtggttgatcaaagtcaccaaccacaatgtcactcaagtg 42756339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 414
Target Start/End: Original strand, 26687784 - 26687827
Alignment:
Q  371 taggggtgttcatgggttgggtcaactcagaaaattcggtcaaa 414  Q
    |||||||||||||||||||||||||| |||||||  ||||||||    
T  26687784 taggggtgttcatgggttgggtcaacccagaaaacccggtcaaa 26687827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 46321398 - 46321359
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtc 178  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  46321398 tgtgacattgtggtcgatcaatgtcaccaaccacaatgtc 46321359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 2254593 - 2254564
Alignment:
Q  135 cacatgtgacattgtggttggtcaatgtca 164  Q
    ||||||||||||||||||||||||||||||    
T  2254593 cacatgtgacattgtggttggtcaatgtca 2254564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 33616188 - 33616139
Alignment:
Q  371 taggggtgttcatgggttgggtcaactcagaaaattcggtcaaatccacc 420  Q
    |||||||||||||||||||||||||| || ||||  |||||||| |||||    
T  33616188 taggggtgttcatgggttgggtcaacccaaaaaacccggtcaaacccacc 33616139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 38324932 - 38324977
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    |||||||||| ||| ||||||| |||| ||||||||||||||||||    
T  38324932 ccacatgtgatattatggttggccaatatcaccaaccacaatgtca 38324977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 168
Target Start/End: Original strand, 46321440 - 46321469
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaa 168  Q
    ||||||||||||||||||||||||||||||    
T  46321440 tgtgacattgtggttggtcaatgtcaccaa 46321469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 6607444 - 6607409
Alignment:
Q  143 acattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    |||||||||||||| ||||||||||||||||||||||    
T  6607444 acattgtggttggt-aatgtcaccaaccacaatgtca 6607409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 6607495 - 6607527
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcacc 166  Q
    |||||||||||||| ||||||||||||||||||    
T  6607495 ccacatgtgacattatggttggtcaatgtcacc 6607527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 9712952 - 9712984
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcacc 166  Q
    |||| ||||||||||||||||||||||||||||    
T  9712952 ccacttgtgacattgtggttggtcaatgtcacc 9712984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 36273062 - 36273102
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  36273062 tgtgatattgtggttggtcaatatcaccgaccacaatgtca 36273102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 40789232 - 40789184
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtg 187  Q
    |||||||||||| |||| |||||||||||| | | ||||||||||||||    
T  40789232 tgtgacattgtgattggccaatgtcaccaaactctatgtcattcaagtg 40789184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 15928073 - 15928144
Alignment:
Q  33 ggataatatttgggtgatattgtggttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaac 104  Q
    |||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||| | ||||||||||||    
T  15928073 ggataatacttgggtgacattgtgattggtgacattatcaaccacaatgttacaagtgtacaaaacaacaac 15928144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 28739413 - 28739468
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  28739413 ccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgct 28739468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 50754782 - 50754737
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  50754782 ccacatgtgacattgtggttggccaatgtcaccaaccacaatgtca 50754737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 9379986 - 9379906
Alignment:
Q  32 cggataatatttgggtgatattgtggttggtgacatt---------accaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||||||||| ||||||||||||||||||         ||||||||||||||||||||| |||||||||||||    
T  9379986 cggataatatttgggtgacattgtggttggtgacattggtaacattaccaaccacaatgttacaagtgtgcaaaacaacaa 9379906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 10449501 - 10449461
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10449501 tgtgacattgtggttggtcaatgtcaccaaccacaatgtca 10449461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 10449447 - 10449504
Alignment:
Q  33 ggataatatttgggtgatattgtggttggtgacatt-accaaccacaatgttacaagt 89  Q
    |||||||| |||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  10449447 ggataatacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagt 10449504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 28739338 - 28739383
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||    
T  28739338 ttggtgacattaccaaccacaatgttacaagtgtgcaaaataacaa 28739383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 50754857 - 50754812
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  50754857 ttggtgacattatcaaccacaatgttacaagtgtgcaaaacaacaa 50754812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 45085981 - 45085931
Alignment:
Q  138 atgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    ||||||||||||||||| | |||||||||||||||||||||| |||||||||    
T  45085981 atgtgacattgtggttg-tgaatgtcaccaaccacaatgtcaatcaagtgct 45085931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 9884971 - 9884929
Alignment:
Q  61 gtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  9884971 gtgacattatcaaccacaatgttacaagtgtgcaaaacaacaa 9884929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 28045452 - 28045410
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaa 100  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  28045452 ttggtgacattaccaaccacaatgttacaagtgtacaaaacaa 28045410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 32830032 - 32829983
Alignment:
Q  371 taggggtgttcatgggttgggtcaactcagaaaattcggtcaaatccacc 420  Q
    ||||||| |||||||||||||||||| |||||||| |||||||| |||||    
T  32830032 taggggtattcatgggttgggtcaacccagaaaatccggtcaaacccacc 32829983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 6539593 - 6539629
Alignment:
Q  67 ttaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    ||||||||||||||||||||||| |||||||||||||    
T  6539593 ttaccaaccacaatgttacaagtgtgcaaaacaacaa 6539629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 44938848 - 44938808
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  44938848 tgtgacattctggttggtcaatgtcactaaccacaatgtca 44938808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 89
Target Start/End: Original strand, 35251201 - 35251232
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagt 89  Q
    ||||||||||||||||||||||||||||||||    
T  35251201 ttggtgacattaccaaccacaatgttacaagt 35251232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 168
Target Start/End: Complemental strand, 12441004 - 12440975
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaa 168  Q
    ||||||||||||||||||||||||||||||    
T  12441004 tgtgacattgtggttggtcaatgtcaccaa 12440975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 28810065 - 28810102
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatg 176  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  28810065 tgtgacattgtggttgaccaatgtcaccaaccacaatg 28810102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 44291102 - 44291061
Alignment:
Q  138 atgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    |||||| |||||||||||||| |||||||||||||| |||||    
T  44291102 atgtgatattgtggttggtcagtgtcaccaaccacattgtca 44291061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 719017 - 718985
Alignment:
Q  157 caatgtcaccaaccacaatgtcattcaagtgct 189  Q
    ||||||||||||||||||||||| |||||||||    
T  719017 caatgtcaccaaccacaatgtcactcaagtgct 718985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 10449579 - 10449611
Alignment:
Q  157 caatgtcaccaaccacaatgtcattcaagtgct 189  Q
    |||||||||||||||||||||||| ||||||||    
T  10449579 caatgtcaccaaccacaatgtcatccaagtgct 10449611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 15837256 - 15837209
Alignment:
Q  371 taggggtgttcatgggttgggtcaactcagaaaattcggtcaaatccac 419  Q
    |||||||||||||||||||||||||| || |||| || |||||||||||    
T  15837256 taggggtgttcatgggttgggtcaaccca-aaaaatccgtcaaatccac 15837209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 44801750 - 44801806
Alignment:
Q  32 cggataatatttgggtgatattgtggttggtgacatt-accaaccacaatgttacaa 87  Q
    ||||||||| || |||||||||||||||| |||||||  ||||||||||||| ||||    
T  44801750 cggataatacttaggtgatattgtggttgatgacattggccaaccacaatgtcacaa 44801806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 44801805 - 44801769
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaat 175  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  44801805 tgtgacattgtggttggccaatgtcatcaaccacaat 44801769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 44801884 - 44801916
Alignment:
Q  157 caatgtcaccaaccacaatgtcattcaagtgct 189  Q
    |||||||||||||||||||||||| ||||||||    
T  44801884 caatgtcaccaaccacaatgtcatccaagtgct 44801916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 7211918 - 7211863
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  7211918 ccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgct 7211863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 17272757 - 17272702
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  17272757 ccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgct 17272702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 17272832 - 17272787
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  17272832 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaa 17272787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 32315760 - 32315710
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    ||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  32315760 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacgcaagtgct 32315710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 29681823 - 29681778
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  29681823 ccacatgtgacgttgtggttggccaatgtcaccaaccacaatgtca 29681778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 29681897 - 29681852
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||||||||||||||||||||||| || ||||||||||    
T  29681897 ttggtgacattaccaaccacaatgttacaagtgtgtaaaacaacaa 29681852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 46282926 - 46282871
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    |||| ||||| ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  46282926 ccacttgtgatattgtggttggccaatgtcaccaactacaatgtcactcaagtgct 46282871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 7211999 - 7212042
Alignment:
Q  135 cacatgtgacattgtggttggtcaatgtcaccaaccacaatgtc 178  Q
    ||||||||||||||||||||| ||||||| || |||||||||||    
T  7211999 cacatgtgacattgtggttggccaatgtctcccaccacaatgtc 7212042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 25099252 - 25099306
Alignment:
Q  35 ataatatttgggtgatattgtggttggtgacattaccaaccacaatgttacaagt 89  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||| ||| ||||||    
T  25099252 ataatatttgggtgatattgtgcttggtggtattaccaactacattgtcacaagt 25099306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 25099354 - 25099404
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    ||||||||||||||||  ||| ||||||||||||||| ||| |||||||||    
T  25099354 tgtgacattgtggttgaccaaagtcaccaaccacaatttcactcaagtgct 25099404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 87
Target Start/End: Complemental strand, 43500114 - 43500085
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaa 87  Q
    ||||||||||||||||||||||||||||||    
T  43500114 ttggtgacattaccaaccacaatgttacaa 43500085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 43500149 - 43500117
Alignment:
Q  32 cggataatatttgggtgatattgtggttggtga 64  Q
    ||||||||||||||| |||||||||||||||||    
T  43500149 cggataatatttgggcgatattgtggttggtga 43500117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 44523895 - 44523943
Alignment:
Q  372 aggggtgttcatgggttgggtcaactcagaaaattcggtcaaatccacc 420  Q
    ||||||||||| ||||||||||||| |||||||  ||||||||| ||||    
T  44523895 aggggtgttcacgggttgggtcaacccagaaaacccggtcaaattcacc 44523943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 369524 - 369571
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagt 186  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  369524 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcactcaagt 369571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 2543843 - 2543888
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  2543843 ccacatgtgacattgtggttggccaatgtcaccaaccacaatgtca 2543888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 2543769 - 2543814
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||||||||||||||||||||||| || ||||||||||    
T  2543769 ttggtgacattaccaaccacaatgttacaagtgtgtaaaacaacaa 2543814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 11448190 - 11448145
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||    
T  11448190 ttggtgacattaccaaccacaatgttataagtgtgcaaaacaacaa 11448145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 28581783 - 28581745
Alignment:
Q  141 tgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  28581783 tgacattgtggttggccaatgtcaccaaccacaatgtca 28581745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 369578 - 369521
Alignment:
Q  33 ggataatatttgggtgatattgtggttggtgacatt-accaaccacaatgttacaagt 89  Q
    |||||||| ||| |||| |||||||||||||||||| |||||||||||||| ||||||    
T  369578 ggataatacttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaagt 369521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 9606567 - 9606518
Alignment:
Q  371 taggggtgttcatgggttgggtcaactcagaaaattcggtcaaatccacc 420  Q
    ||||||||||||||||||||||||||  |||||| ||||||||| |||||    
T  9606567 taggggtgttcatgggttgggtcaacctagaaaactcggtcaaacccacc 9606518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 16193834 - 16193874
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  16193834 tgtgacattgtggttgaccaatgtcaccaaccacaatgtca 16193874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 16193889 - 16193822
Alignment:
Q  32 cggataatatttgggtgatattgtggttggtgacatt-accaaccacaatgttacaagtatgcaaaac 98  Q
    ||||||||| |||||||| ||||||||||||||||||   |||||||||||| |||||| | ||||||    
T  16193889 cggataatacttgggtgacattgtggttggtgacattggtcaaccacaatgtcacaagtgtacaaaac 16193822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 178692 - 178660
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcacc 166  Q
    ||||||||||||||||||||| |||||||||||    
T  178692 ccacatgtgacattgtggttgatcaatgtcacc 178660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 4421895 - 4421846
Alignment:
Q  371 taggggtgttcatgggttgggtcaactcagaaaattcggtcaaatccacc 420  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  4421895 taggggtgttcatgggttgggtcaactcagaaaatccggtcaaacccacc 4421846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 5215594 - 5215640
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaac 104  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  5215594 ttggtgacattaccaaccacaatgttacaagtgtacaaaacaacaac 5215640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 9177946 - 9178000
Alignment:
Q  135 cacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||    
T  9177946 cacatgtgatattgtggttggccaatatcaccaaccacaatgtcatccaagtgct 9178000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 42772070 - 42772108
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgt 177  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42772070 tgtgacattgtggttggtcaatgtcaccaaccacaatgt 42772108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 22097488 - 22097538
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||||||||||    
T  22097488 tgtgacattgtagttgaccaatgtcaccaactacaatgtcattcaagtgct 22097538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 25879406 - 25879460
Alignment:
Q  135 cacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgct 189  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||| ||| ||||    
T  25879406 cacatgtgacattgtggttggctaatatcaccaaccacaatgtcatccaaatgct 25879460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 29385313 - 29385355
Alignment:
Q  61 gtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  29385313 gtgatattaccaaccacaatgttacaagtgtgcaaaacaacaa 29385355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 19417577 - 19417533
Alignment:
Q  58 ttggtgacattaccaaccacaatgttacaagtatgcaaaacaacaa 103  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||    
T  19417577 ttggtgacattaccaaccacaatgtt-caagtgtgcaaaacaacaa 19417533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 12605660 - 12605700
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  12605660 tgtgacattgtggttgaccaatgtcaccaaccacaatgtca 12605700  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 5215670 - 5215729
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcattcaagtgctgccc 193  Q
    |||||||||| ||||||||||  |||||||| ||||||||||||||  |||||| |||||    
T  5215670 ccacatgtgatattgtggttgaccaatgtcatcaaccacaatgtcacccaagtgttgccc 5215729  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Original strand, 6010451 - 6010498
Alignment:
Q  371 taggggtgttcatgggttgggtcaactcagaaaattcggtcaaatcca 418  Q
    ||||| |||| ||||||||||||||  |||||||||||||||||||||    
T  6010451 tagggatgtttatgggttgggtcaatccagaaaattcggtcaaatcca 6010498  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 23219389 - 23219427
Alignment:
Q  141 tgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  23219389 tgacattgtggttggccaaggtcaccaaccacaatgtca 23219427  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 29385385 - 29385419
Alignment:
Q  134 ccacatgtgacattgtggttggtcaatgtcaccaa 168  Q
    |||||||||||||||||||||| ||||||||||||    
T  29385385 ccacatgtgacattgtggttggccaatgtcaccaa 29385419  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 168
Target Start/End: Complemental strand, 7137694 - 7137665
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaa 168  Q
    ||||||||||||||||||||||||||||||    
T  7137694 tgtgacattgtggttggtcaatgtcaccaa 7137665  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 896322 - 896286
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaat 175  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  896322 tgtgacattgtggttgatcaatatcaccaaccacaat 896286  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 44172185 - 44172234
Alignment:
Q  371 taggggtgttcatgggttgggtcaactcagaaaattcggtcaaatccacc 420  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  44172185 taggggtgttcatgggttgagtcaacccagaaaattcggtcaaattcacc 44172234  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 45051339 - 45051383
Alignment:
Q  135 cacatgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    |||||||||||||||||| || |||||||||||||||||||||||    
T  45051339 cacatgtgacattgtggtcggccaatgtcaccaaccacaatgtca 45051383  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 4531848 - 4531889
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcat 180  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  4531848 tgtgacattgtggttggtcaatatcaccaactacaatgtcat 4531889  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 24616859 - 24616907
Alignment:
Q  370 ataggggtgttcatgggttgggtcaactcagaaaattcggtcaaatcca 418  Q
    ||||| ||||||||||||||||||||| |||||||   |||||||||||    
T  24616859 ataggagtgttcatgggttgggtcaacccagaaaacctggtcaaatcca 24616907  T

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Target: scaffold1315 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 1866 - 1826
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  1866 tgtgatattgtggttgatcaatgtcaccaaccacaatgtca 1826  T

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Target: scaffold1293 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 205 - 245
Alignment:
Q  139 tgtgacattgtggttggtcaatgtcaccaaccacaatgtca 179  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  205 tgtgatattgtggttgatcaatgtcaccaaccacaatgtca 245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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