View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9411_high_5 (Length: 250)

Name: NF9411_high_5
Description: NF9411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9411_high_5
NF9411_high_5
[»] chr4 (44 HSPs)
chr4 (55-240)||(12034277-12034462)
chr4 (55-133)||(12032505-12032583)
chr4 (152-240)||(17381276-17381364)
chr4 (158-236)||(11840064-11840142)
chr4 (120-190)||(12034261-12034331)
chr4 (158-240)||(31903511-31903593)
chr4 (163-236)||(17381580-17381653)
chr4 (1-56)||(12032410-12032465)
chr4 (120-191)||(12032489-12032560)
chr4 (158-240)||(8170987-8171069)
chr4 (78-133)||(12034193-12034248)
chr4 (158-225)||(30316043-30316110)
chr4 (158-236)||(4161620-4161698)
chr4 (158-240)||(35255489-35255571)
chr4 (158-238)||(4215195-4215275)
chr4 (151-235)||(32934171-32934255)
chr4 (149-236)||(11839757-11839844)
chr4 (160-240)||(51151046-51151127)
chr4 (157-237)||(971843-971922)
chr4 (160-240)||(46804755-46804835)
chr4 (158-236)||(13834325-13834403)
chr4 (179-225)||(20217494-20217540)
chr4 (158-236)||(40407667-40407745)
chr4 (159-225)||(46433622-46433688)
chr4 (158-240)||(50384348-50384430)
chr4 (158-240)||(56095227-56095309)
chr4 (158-235)||(1758297-1758374)
chr4 (162-235)||(12922168-12922241)
chr4 (160-236)||(17753258-17753335)
chr4 (158-236)||(11298454-11298530)
chr4 (158-225)||(26499277-26499344)
chr4 (165-235)||(14810473-14810543)
chr4 (160-236)||(3528065-3528141)
chr4 (156-236)||(24806759-24806839)
chr4 (120-163)||(12032596-12032639)
chr4 (149-236)||(31903239-31903327)
chr4 (168-234)||(35255307-35255373)
chr4 (165-235)||(37687267-37687337)
chr4 (166-207)||(35763064-35763105)
chr4 (160-225)||(55132578-55132643)
chr4 (160-240)||(13834535-13834614)
chr4 (160-236)||(40317794-40317870)
chr4 (160-236)||(40327868-40327944)
chr4 (158-235)||(51150836-51150915)
[»] chr2 (25 HSPs)
chr2 (120-233)||(20167625-20167738)
chr2 (136-231)||(20360271-20360366)
chr2 (158-240)||(40124262-40124344)
chr2 (168-240)||(7165772-7165844)
chr2 (158-232)||(39273385-39273459)
chr2 (164-236)||(21603707-21603779)
chr2 (196-239)||(34883934-34883977)
chr2 (154-240)||(6788512-6788598)
chr2 (159-240)||(15301612-15301693)
chr2 (187-236)||(17604256-17604305)
chr2 (158-203)||(29282804-29282849)
chr2 (158-203)||(29286029-29286074)
chr2 (158-203)||(29305618-29305663)
chr2 (161-230)||(39698884-39698953)
chr2 (165-235)||(1090314-1090384)
chr2 (161-215)||(5538782-5538836)
chr2 (170-236)||(5708989-5709055)
chr2 (165-235)||(6923876-6923946)
chr2 (158-196)||(29284263-29284301)
chr2 (166-239)||(1417570-1417643)
chr2 (187-240)||(18903195-18903248)
chr2 (161-214)||(23359344-23359397)
chr2 (165-206)||(29296492-29296533)
chr2 (166-203)||(29307314-29307351)
chr2 (161-237)||(1517541-1517617)
[»] chr3 (29 HSPs)
chr3 (148-236)||(46848400-46848488)
chr3 (159-240)||(30843830-30843911)
chr3 (160-233)||(14984407-14984479)
chr3 (154-232)||(30669351-30669429)
chr3 (158-231)||(51889755-51889828)
chr3 (159-225)||(29079312-29079378)
chr3 (160-236)||(621889-621963)
chr3 (160-235)||(26483037-26483112)
chr3 (156-235)||(31198069-31198148)
chr3 (158-225)||(43837081-43837148)
chr3 (159-225)||(20936563-20936629)
chr3 (160-236)||(45681121-45681198)
chr3 (155-223)||(24255215-24255283)
chr3 (160-240)||(40619216-40619296)
chr3 (159-210)||(23567355-23567406)
chr3 (161-236)||(53705982-53706057)
chr3 (151-236)||(3941841-3941929)
chr3 (158-236)||(14194953-14195030)
chr3 (160-204)||(14984716-14984760)
chr3 (160-207)||(41898079-41898126)
chr3 (179-238)||(47199726-47199785)
chr3 (158-236)||(621601-621679)
chr3 (189-235)||(32537496-32537541)
chr3 (194-236)||(38989763-38989805)
chr3 (160-237)||(21568562-21568639)
chr3 (187-236)||(31186455-31186504)
chr3 (160-233)||(48047788-48047861)
chr3 (159-240)||(51890049-51890130)
chr3 (163-219)||(12832320-12832376)
[»] chr6 (29 HSPs)
chr6 (140-236)||(6699687-6699784)
chr6 (159-235)||(10219536-10219612)
chr6 (136-230)||(24285283-24285377)
chr6 (158-236)||(516022-516100)
chr6 (158-240)||(19264748-19264829)
chr6 (158-236)||(21020849-21020927)
chr6 (158-236)||(26368924-26369002)
chr6 (160-225)||(33806951-33807016)
chr6 (158-236)||(6524842-6524920)
chr6 (158-236)||(10067452-10067530)
chr6 (158-240)||(10067747-10067829)
chr6 (161-235)||(7792013-7792087)
chr6 (162-236)||(9436770-9436844)
chr6 (55-109)||(24285323-24285377)
chr6 (155-225)||(25084898-25084968)
chr6 (158-236)||(27100724-27100802)
chr6 (179-233)||(34937448-34937502)
chr6 (159-236)||(33806649-33806726)
chr6 (153-233)||(19134256-19134336)
chr6 (160-240)||(20565798-20565877)
chr6 (59-109)||(6699733-6699784)
chr6 (192-235)||(29920451-29920494)
chr6 (158-236)||(9307493-9307571)
chr6 (154-236)||(31141911-31141993)
chr6 (73-110)||(21020845-21020882)
chr6 (175-236)||(21237172-21237233)
chr6 (168-225)||(25085126-25085183)
chr6 (188-236)||(515755-515803)
chr6 (159-235)||(20564658-20564733)
[»] chr5 (23 HSPs)
chr5 (159-236)||(16127049-16127126)
chr5 (160-236)||(6217673-6217749)
chr5 (160-233)||(29686426-29686499)
chr5 (160-235)||(18970264-18970339)
chr5 (159-237)||(917187-917265)
chr5 (152-225)||(18969983-18970056)
chr5 (152-235)||(23159021-23159104)
chr5 (166-240)||(17676820-17676894)
chr5 (158-199)||(16902987-16903028)
chr5 (170-240)||(27001412-27001482)
chr5 (158-195)||(2707820-2707857)
chr5 (155-236)||(7756702-7756783)
chr5 (158-235)||(42420559-42420636)
chr5 (154-206)||(37853512-37853564)
chr5 (158-225)||(655436-655503)
chr5 (161-236)||(35293840-35293915)
chr5 (168-231)||(42420314-42420377)
chr5 (76-110)||(16902986-16903020)
chr5 (158-235)||(11498057-11498134)
chr5 (161-230)||(14491940-14492009)
chr5 (161-241)||(29714708-29714789)
chr5 (193-225)||(27554357-27554389)
chr5 (165-233)||(32270679-32270747)
[»] chr1 (38 HSPs)
chr1 (162-237)||(6728025-6728100)
chr1 (158-231)||(31134759-31134832)
chr1 (154-240)||(27463933-27464019)
chr1 (158-223)||(45392286-45392351)
chr1 (157-207)||(32669782-32669832)
chr1 (160-230)||(32670016-32670086)
chr1 (162-236)||(35684919-35684993)
chr1 (160-236)||(6541006-6541082)
chr1 (152-236)||(34177515-34177599)
chr1 (160-235)||(37228651-37228726)
chr1 (158-233)||(38267444-38267519)
chr1 (170-240)||(19464225-19464295)
chr1 (157-235)||(38901477-38901555)
chr1 (160-233)||(36144785-36144858)
chr1 (165-240)||(30519042-30519118)
chr1 (159-235)||(39162405-39162481)
chr1 (163-234)||(9890730-9890801)
chr1 (161-236)||(27900620-27900695)
chr1 (161-236)||(34177278-34177353)
chr1 (159-225)||(8791928-8791994)
chr1 (162-240)||(16192270-16192348)
chr1 (158-236)||(50804264-50804342)
chr1 (170-235)||(45679514-45679579)
chr1 (177-236)||(10018720-10018779)
chr1 (168-231)||(33747277-33747340)
chr1 (160-231)||(50155810-50155881)
chr1 (147-198)||(50194203-50194254)
chr1 (194-240)||(8778986-8779032)
chr1 (73-110)||(6728071-6728108)
chr1 (160-225)||(9777146-9777211)
chr1 (73-110)||(31134799-31134836)
chr1 (71-104)||(34177566-34177599)
chr1 (164-237)||(38445198-38445271)
chr1 (160-236)||(8234050-8234126)
chr1 (161-225)||(13359495-13359559)
chr1 (160-240)||(30050300-30050380)
chr1 (161-237)||(30050623-30050699)
chr1 (168-236)||(33746808-33746876)
[»] chr8 (24 HSPs)
chr8 (158-236)||(17488223-17488301)
chr8 (158-240)||(21601906-21601987)
chr8 (158-237)||(21600667-21600745)
chr8 (159-240)||(2987171-2987251)
chr8 (160-225)||(8340346-8340411)
chr8 (160-236)||(28802283-28802359)
chr8 (158-237)||(4586748-4586827)
chr8 (160-238)||(21145663-21145743)
chr8 (160-236)||(7574372-7574447)
chr8 (157-225)||(8982309-8982377)
chr8 (155-218)||(18080177-18080240)
chr8 (158-236)||(41303181-41303259)
chr8 (159-225)||(42844831-42844897)
chr8 (160-236)||(21215898-21215974)
chr8 (164-236)||(21602206-21602278)
chr8 (168-235)||(3662324-3662391)
chr8 (158-237)||(41302629-41302708)
chr8 (171-225)||(7603904-7603958)
chr8 (178-236)||(21600420-21600478)
chr8 (168-230)||(24303878-24303940)
chr8 (165-235)||(36469423-36469493)
chr8 (158-235)||(7681041-7681118)
chr8 (158-235)||(33590090-33590167)
chr8 (179-235)||(42442744-42442800)
[»] chr7 (29 HSPs)
chr7 (159-239)||(34703628-34703707)
chr7 (158-225)||(18942735-18942802)
chr7 (158-240)||(8062896-8062978)
chr7 (158-240)||(38838672-38838754)
chr7 (160-217)||(30839950-30840007)
chr7 (164-240)||(20889444-20889520)
chr7 (160-240)||(32996528-32996608)
chr7 (158-218)||(46720065-46720125)
chr7 (160-223)||(45540036-45540099)
chr7 (159-225)||(19303600-19303665)
chr7 (164-240)||(14669237-14669313)
chr7 (169-237)||(1247507-1247575)
chr7 (160-240)||(5358207-5358287)
chr7 (158-225)||(21401749-21401816)
chr7 (160-223)||(23190965-23191028)
chr7 (170-240)||(12849744-12849814)
chr7 (174-236)||(12927837-12927899)
chr7 (191-230)||(1344644-1344683)
chr7 (158-225)||(6983273-6983340)
chr7 (161-208)||(12927603-12927650)
chr7 (160-235)||(39608612-39608687)
chr7 (160-237)||(27376223-27376300)
chr7 (156-197)||(40355139-40355180)
chr7 (158-218)||(24127152-24127212)
chr7 (145-237)||(26904931-26905022)
chr7 (165-225)||(29196758-29196818)
chr7 (74-110)||(30839976-30840012)
chr7 (161-237)||(39791827-39791902)
chr7 (181-225)||(49078226-49078270)
[»] scaffold0329 (2 HSPs)
scaffold0329 (160-236)||(6196-6272)
scaffold0329 (160-236)||(6471-6547)
[»] scaffold0045 (2 HSPs)
scaffold0045 (161-235)||(20536-20610)
scaffold0045 (160-225)||(20845-20910)
[»] scaffold0086 (1 HSPs)
scaffold0086 (159-225)||(21898-21964)
[»] scaffold0005 (1 HSPs)
scaffold0005 (165-235)||(29185-29255)
[»] scaffold0252 (1 HSPs)
scaffold0252 (162-234)||(17301-17373)
[»] scaffold0384 (1 HSPs)
scaffold0384 (185-240)||(7632-7687)
[»] scaffold0002 (2 HSPs)
scaffold0002 (161-208)||(349225-349272)
scaffold0002 (164-233)||(348934-349003)
[»] scaffold0687 (1 HSPs)
scaffold0687 (171-225)||(1588-1642)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 55 - 240
Target Start/End: Original strand, 12034277 - 12034462
Alignment:
Q  55 atatttggttaaaaataaaaggggtaatagtcattttcgtccctgaatgtataacgtgatatacacaattgcatggagaacatatttggttaaaaataaa 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  12034277 atatttggttaaaaataaaaggggtaatagtcattttcgtccctgaatgtataactggatatacacaattgcatggagaacatatttggttaaaaataaa 12034376  T
Q  155 agaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12034377 aggggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 12034462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 12032505 - 12032583
Alignment:
Q  55 atatttggttaaaaataaaaggggtaatagtcattttcgtccctgaatgtataacgtgatatacacaattgcatggaga 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12032505 atatttggttaaaaataaaaggggtaatagtcattttcgtccctgaatgtataacgtgatatacacaattgcatcgaga 12032583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 17381276 - 17381364
Alignment:
Q  152 aaaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||| |||||||||||||||||| ||||||||| || | ||||||||||||||||| |||||||||||||||| ||||| ||||||||    
T  17381276 aaaaggggtaatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatttcaaaaaagtctctg 17381364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 11840142 - 11840064
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||||||||||||||||  ||| |||||||| |||||| ||||||||||||||||||| ||||||||||    
T  11840142 ggtaatagtcattttggtccctgaatgcgtaaggagtagtcgcaataggccctcaatgtatcaaaatttcaaaatagtc 11840064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 12034261 - 12034331
Alignment:
Q  120 caattgcatggagaacatatttggttaaaaataaaagaggtaatagtcattttggtccctgaatgtataac 190  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  12034261 caattgcatggagataatatttggttaaaaataaaaggggtaatagtcattttcgtccctgaatgtataac 12034331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 31903593 - 31903511
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||| |||||||||||| |||||||| |||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  31903593 ggtaatggtcattttggtctctgaatgtgtaacgaatagttacaatagtccctcaacgtatcaaaattccaaaatagtctctg 31903511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 17381653 - 17381580
Alignment:
Q  163 tagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||| |||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  17381653 tagtcactttggtccctgaatgagtaacaagtagtcacaatagtccctcaatgtatcaaaattccaaaatagtc 17381580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12032410 - 12032465
Alignment:
Q  1 aaacacatgttgttaaatcgtttaagataaagttttacgattcattacaatcatat 56  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12032410 aaacacatgttgttaaatcttttaagataaagttttacgattcattacaatcatat 12032465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 12032489 - 12032560
Alignment:
Q  120 caattgcatggagaacatatttggttaaaaataaaagaggtaatagtcattttggtccctgaatgtataacg 191  Q
    ||||| ||||||||  ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  12032489 caattacatggagataatatttggttaaaaataaaaggggtaatagtcattttcgtccctgaatgtataacg 12032560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 8171069 - 8170987
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||| ||||| ||||||||||| |||| ||| ||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  8171069 ggtaacagtcactttggtccctggatgtgtaatgagtagtcataatagtccctcaatgtataaaaatttcaaaatagtctctg 8170987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 12034193 - 12034248
Alignment:
Q  78 gtaatagtcattttcgtccctgaatgtataacgtgatatacacaattgcatggaga 133  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  12034193 gtaatagtcattttcgtccttgaatgtataacgtgatatacacaattgcatcgaga 12034248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 30316110 - 30316043
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||||||||||| |||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||    
T  30316110 ggtaatagtcatattggtccctgaatgtataataagtagtcacaaaagtccttcaatgtatcaaaatt 30316043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 4161620 - 4161698
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||||| ||| |||||  ||||| ||| |||||||||||||||||| |||||||||||||||| ||||||||||    
T  4161620 ggtaatagtcactttcgtccccaaatgtgtaatgagtagtcacaatagtccttcaatgtatcaaaatttcaaaatagtc 4161698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 35255571 - 35255489
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||| |||||||||||| ||| | ||||||||||||||||||||| |||||||||| ||||||  |||||||| ||||    
T  35255571 ggtaatagttattttggtccctaaatatgtaacgagtagtcacaatagtctctcaatgtattaaaattttaaaatagtatctg 35255489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 4215275 - 4215195
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctc 238  Q
    |||||||||||||| | | || |||||| |||||||||||| |||||||||||||||| |||||||||  |||||||||||    
T  4215275 ggtaatagtcatttcgatacccgaatgtgtaacgagtagtcgcaatagtccctcaatgaatcaaaattttaaaatagtctc 4215195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 32934255 - 32934171
Alignment:
Q  151 taaaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    |||||| ||||||| |||||||||||||||||||| ||| ||||   || |||||||||||||||||||||||||  ||||||||    
T  32934255 taaaaggggtaataatcattttggtccctgaatgtgtaaggagtgaccataatagtccctcaatgtatcaaaattttaaaatagt 32934171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 11839757 - 11839844
Alignment:
Q  149 aataaaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||| || |||||||| ||||||||||  ||||| | |||||||||| ||||||||||||||||| |||| ||||| ||||||||||    
T  11839757 aataataggggtaatagccattttggtctatgaatttgtaacgagtagccacaatagtccctcaatatatcgaaatttcaaaatagtc 11839844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 51151127 - 51151046
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaat-agtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||| |||||||||| ||||||| ||||||||||||||||| | || |||||||||| ||||||  |||||||||||||    
T  51151127 taatagttattttggtccttgaatgtgtaacgagtagtcacaataaatctctcaatgtattaaaattttaaaatagtctctg 51151046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 971843 - 971922
Alignment:
Q  157 aggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    |||||||||||| || |||| |||||| | |||||||| ||||||||||||  |||||||||||||||| |||||||||||    
T  971843 aggtaatagtcactt-ggtcactgaatttgtaacgagttgtcacaatagtcattcaatgtatcaaaatttcaaaatagtct 971922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 46804755 - 46804835
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||| | |||||  ||||| | ||||||| ||| |||||||||||||||||||||||||||  |||||||||||||    
T  46804755 taatagtcactatggtctttgaatatgtaacgagcagtgacaatagtccctcaatgtatcaaaattttaaaatagtctctg 46804835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 13834325 - 13834403
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||| | |||||||||||||||||| ||| |||||  || |||||||||||||| ||||||||||  |||||||||    
T  13834325 ggtaataattattttggtccctgaatgtgtaaggagtaaccataatagtccctcaatttatcaaaattttaaaatagtc 13834403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 20217540 - 20217494
Alignment:
Q  179 tgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||    
T  20217540 tgaatgtataacgagtagccacaatagtctctcaatgtatcaaaatt 20217494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 40407745 - 40407667
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||| | |||||||||||||||||| ||| |||||  || |||||||| ||||||||||||||||  |||||||||    
T  40407745 ggtaataattattttggtccctgaatgtgtaaggagtaaccataatagtccttcaatgtatcaaaattttaaaatagtc 40407667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 46433688 - 46433622
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||||||||||||||||| | | ||| |||||||| |||||||| |||| ||||||||||||||||    
T  46433688 gtaatagtcattttggtccataattgtttaacgagtggtcacaattgtccttcaatgtatcaaaatt 46433622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 50384348 - 50384430
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||| |||||||||| ||||||||| ||| || ||| || |||||| || |||||||| |||||| ||||||||||||||    
T  50384348 ggtaataatcattttggttcctgaatgtgtaatgattagccataatagtaccccaatgtattaaaatttcaaaatagtctctg 50384430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 56095309 - 56095227
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||| | |||||||||||| ||||| ||||||||||||||||||||  |||| ||||| ||||||  ||||| |||||||    
T  56095309 ggtaataattattttggtcccttaatgtgtaacgagtagtcacaatagtatctcattgtattaaaattttaaaattgtctctg 56095227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 1758297 - 1758374
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    |||||| |||||||||| || ||||||| ||| |||||| || ||||| | ||||||||||||||||| |||||||||    
T  1758297 ggtaatggtcattttggcccttgaatgtgtaaggagtagccataatagacactcaatgtatcaaaatttcaaaatagt 1758374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 12922168 - 12922241
Alignment:
Q  162 atagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||| |||||||||||||||||| |||  |||||||||||||||   |||||||||| ||||| |||||||||    
T  12922168 atagttattttggtccctgaatgtgtaataagtagtcacaatagtatttcaatgtatcgaaatttcaaaatagt 12922241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 17753258 - 17753335
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtc-cctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||| || |||||| | ||| |||||||||||||||||   |||||||||||||||| ||||||||||    
T  17753258 taatagtcattttgatctctgaatatgtaatgagtagtcacaatagtcatttcaatgtatcaaaatttcaaaatagtc 17753335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 11298454 - 11298530
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||||||||| |||||||||||| |||||||  | |||| || | |||||||||||||||||| ||||| ||||    
T  11298454 ggtaatagtcattttagtccctgaatgtgtaacgag--gccacagtaattcctcaatgtatcaaaatttcaaaagagtc 11298530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 26499277 - 26499344
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||||||||||||||||| ||||||||| |||  ||||||||||||| || || ||||||| ||||||    
T  26499277 ggtaatagtcattttggttcctgaatgtgtaaaaagtagtcacaataatctcttaatgtattaaaatt 26499344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 14810543 - 14810473
Alignment:
Q  165 gtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    |||| |||||||| ||| |||||| | ||||||||||||||||| || | ||||||||||| |||||||||    
T  14810543 gtcactttggtccttgagtgtatagcaagtagtcacaatagtccttcgacgtatcaaaatttcaaaatagt 14810473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 3528065 - 3528141
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||| ||| |||||||| | ||||| ||| || |||||| ||||||||||||||||| || |||| ||||||||||    
T  3528065 taataatcactttggtccataaatgtgtaatgaatagtcaaaatagtccctcaatgtaccagaatttcaaaatagtc 3528141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 24806839 - 24806759
Alignment:
Q  156 gaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||||||||||||||  |||||||  |||  |||||| |||||||||||| |||||||  |||||  |||||||||    
T  24806839 gaggtaatagtcattttggtatctgaatgcgtaataagtagttacaatagtcccttaatgtattgaaatttgaaaatagtc 24806759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 12032596 - 12032639
Alignment:
Q  120 caattgcatggagaacatatttggttaaaaataaaagaggtaat 163  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||    
T  12032596 caattgcatggagataatatttggttaaaaataaaaggggtaat 12032639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 31903239 - 31903327
Alignment:
Q  149 aataaaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctca--atgtatcaaaattgcaaaatagtc 236  Q
    ||||| || ||||||||||||||| | |||||||||| |||| |||||| | ||||||||| ||  || |||||||||| ||||||||||    
T  31903239 aataacaggggtaatagtcatttt-gaccctgaatgtgtaacaagtagttataatagtcccacaatatatatcaaaatttcaaaatagtc 31903327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 35255307 - 35255373
Alignment:
Q  168 attttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatag 234  Q
    |||||||||||||||| | ||| |||||   | |||||||||||||||||||||||||  |||||||    
T  35255307 attttggtccctgaatatgtaaggagtaactataatagtccctcaatgtatcaaaatttaaaaatag 35255373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 37687337 - 37687267
Alignment:
Q  165 gtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    |||||||||||| |||||||||||| || |||| |||||| |  |||||| ||||||||||  ||||||||    
T  37687337 gtcattttggtctctgaatgtataatgattagttacaataatttctcaatatatcaaaattttaaaatagt 37687267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 35763064 - 35763105
Alignment:
Q  166 tcattttggtccctgaatgtataacgagtagtcacaatagtc 207  Q
    ||||||| ||| |||||||| |||||||||||||||||||||    
T  35763064 tcattttcgtctctgaatgtgtaacgagtagtcacaatagtc 35763105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 55132643 - 55132578
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||||||||||||| || |||||||| ||| ||| ||||| ||||||   ||||||||||||||||    
T  55132643 taatagtcattttgatctctgaatgtgtaaggagcagtcaaaatagtttttcaatgtatcaaaatt 55132578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 13834614 - 13834535
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||| |||| ||||| ||||||| ||| |||||||||||| ||||  | ||||||| ||||||  |||||||||||||    
T  13834614 taatagttatttaggtcc-tgaatgtgtaatgagtagtcacaacagtcttttaatgtattaaaattttaaaatagtctctg 13834535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 40317870 - 40317794
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||| ||| ||||||| ||| || | ||||||||||| | ||||||||| ||| ||  |||||||||    
T  40317870 taatagtcattttgatccatgaatgtgtaatgaattgtcacaatagttcatcaatgtataaaatttttaaaatagtc 40317794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 40327944 - 40327868
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||| ||| ||||||| ||| || | ||||||||||| | ||||||||| ||| ||  |||||||||    
T  40327944 taatagtcattttgatccatgaatgtgtaatgaattgtcacaatagttcatcaatgtataaaatttttaaaatagtc 40327868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 51150836 - 51150915
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcaca--atagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||| |||||||||| ||||||| | ||| ||||||||| |  |||| || ||||||||||||||||  ||||||||    
T  51150836 ggtaataatcattttggttcctgaatatgtaaggagtagtcatataatagaccatcaatgtatcaaaattttaaaatagt 51150915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 20167738 - 20167625
Alignment:
Q  120 caattgcatggagaacatatttggttaaaaataaaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatc 219  Q
    |||||||| |||||  ||||||| ||| |||||||||||||||||||||||||||||  | ||||| |||| |||||||||||||||| ||||||| |||    
T  20167738 caattgcacggagataatatttgattacaaataaaagaggtaatagtcattttggtctttaaatgtgtaacaagtagtcacaatagtcactcaatgcatc 20167639  T
Q  220 aaaattgcaaaata 233  Q
    ||||||||||||||    
T  20167638 aaaattgcaaaata 20167625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 20360271 - 20360366
Alignment:
Q  136 atatttggttaaaaataaaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaa 231  Q
    ||||||| ||||||||||||  ||||| ||||||||||||| || ||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  20360271 atatttgattaaaaataaaatgggtaacagtcattttggtctctaaatgtctaacgagtagtcacaatagtcactcaatgcatcaaaattgcaaaa 20360366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 40124262 - 40124344
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||||||||| | |||||||| |||||  ||||| |||||||    
T  40124262 ggtaatagtcactttggtccttgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaatggtctctg 40124344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 7165844 - 7165772
Alignment:
Q  168 attttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||| ||||| ||||| |||||||||||||||||||||  ||||||||| ||||||  |||||||||||||    
T  7165844 attttgatccctaaatgtgtaacgagtagtcacaatagtctttcaatgtattaaaattttaaaatagtctctg 7165772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 39273459 - 39273385
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaat 232  Q
    |||||||| |||||||||| |||||||| ||| |||||| ||||||||||||| |||||||  ||||| ||||||    
T  39273459 ggtaatagccattttggtctctgaatgtgtaatgagtagccacaatagtccctaaatgtattgaaatttcaaaat 39273385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 21603779 - 21603707
Alignment:
Q  164 agtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||| |||||||| ||| |||||| | ||||||||||||||||| || | ||||||||||| ||||||||||    
T  21603779 agtcactttggtccttgagtgtatagcaagtagtcacaatagtccttcgacgtatcaaaatttcaaaatagtc 21603707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 34883934 - 34883977
Alignment:
Q  196 gtcacaatagtccctcaatgtatcaaaattgcaaaatagtctct 239  Q
    ||||||||||||||||||||||||||||||  ||||||||||||    
T  34883934 gtcacaatagtccctcaatgtatcaaaattttaaaatagtctct 34883977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 6788598 - 6788512
Alignment:
Q  154 aagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||||||||||||||||  ||| | ||||| |||| | |||||| |||||||  ||||||||||||||||  |||||||| ||||    
T  6788598 aagaggtaatagtcattttcatccttaaatgtgtaacaaatagtcataatagtcattcaatgtatcaaaattttaaaatagtttctg 6788512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 15301693 - 15301612
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||||| |||||| ||| | ||||| |||||| || ||||||| ||| ||||||||||| ||||| ||||||| ||||||    
T  15301693 gtaatagttattttgatccttaaatgtgtaacgactaatcacaatcgtctctcaatgtatcgaaatttcaaaataatctctg 15301612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 17604256 - 17604305
Alignment:
Q  187 taacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||||||||||||||  |||||| |||||||||| ||||||||||    
T  17604256 taacgagtagtcacaatagttactcaatttatcaaaatttcaaaatagtc 17604305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 29282804 - 29282849
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaat 203  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||||    
T  29282804 ggtaaaagtcattttgatccctgaatgtataacgagtagccacaat 29282849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 29286029 - 29286074
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaat 203  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||||    
T  29286029 ggtaacagtcattttgatccctgaatgtataacgagtagccacaat 29286074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 29305663 - 29305618
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaat 203  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||||    
T  29305663 ggtaacagtcattttgatccctgaatgtataacgagtagccacaat 29305618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 39698953 - 39698884
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaa 230  Q
    |||| ||||||| || ||| |||||||||||||||| || ||||||| ||||||||| ||||||| ||||    
T  39698953 aatattcattttcgttcctaaatgtataacgagtagccataatagtctctcaatgtagcaaaattacaaa 39698884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 1090384 - 1090314
Alignment:
Q  165 gtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    |||||||||||| |||||||||||| || |||| |||||| | ||||||| || |||||||  ||||||||    
T  1090384 gtcattttggtctctgaatgtataatgattagttacaataattcctcaatatagcaaaattttaaaatagt 1090314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 5538836 - 5538782
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatg 215  Q
    |||| ||||||| || |||||||||| ||||| ||||||||||||||| ||||||    
T  5538836 aataatcattttcgttcctgaatgtacaacgattagtcacaatagtccatcaatg 5538782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 5708989 - 5709055
Alignment:
Q  170 tttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||| ||||||| ||| || || |||||||||||| |||||||||||  ||| ||||||||||    
T  5708989 tttggtccttgaatgtgtaatgattaatcacaatagtccttcaatgtatcaggattccaaaatagtc 5709055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 6923946 - 6923876
Alignment:
Q  165 gtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||||| || |||||||||||| || |||| |||||| | ||||||| ||||||||||  ||||||||    
T  6923946 gtcattttgatctctgaatgtataatgattagttacaataattcctcaatatatcaaaattttaaaatagt 6923876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 29284301 - 29284263
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtag 196  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  29284301 ggtaacagtcattttgatccctgaatgtataacgagtag 29284263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 1417643 - 1417570
Alignment:
Q  166 tcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctct 239  Q
    ||||||| |||| ||||||| |||| ||| |  |||||||||||| ||| |||||||||| ||||||| |||||    
T  1417643 tcattttagtccatgaatgtgtaacaagttggtacaatagtccctaaatatatcaaaatttcaaaatattctct 1417570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 18903248 - 18903195
Alignment:
Q  187 taacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||||||||||||||||||  |||||||||| |||||  |||||||| ||||    
T  18903248 taacgagtagtcacaatagtcattcaatgtatcgaaattctaaaatagtttctg 18903195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 23359344 - 23359397
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaat 214  Q
    |||||||||||| |||||  ||||| |||||| ||||||||||||||| |||||    
T  23359344 aatagtcatttttgtcccgaaatgtgtaacgaatagtcacaatagtccttcaat 23359397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 29296533 - 29296492
Alignment:
Q  165 gtcattttggtccctgaatgtataacgagtagtcacaatagt 206  Q
    ||||||||| |||||||||| ||||||||||| |||||||||    
T  29296533 gtcattttgatccctgaatgaataacgagtagccacaatagt 29296492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 29307314 - 29307351
Alignment:
Q  166 tcattttggtccctgaatgtataacgagtagtcacaat 203  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  29307314 tcattttgatccctgaatgtataacgagtagccacaat 29307351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 1517541 - 1517617
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    ||||||||||||| |  ||| |||| |||||| |||| || ||||||| |||||||||| |||||  ||||||||||    
T  1517541 aatagtcattttgatatctggatgtgtaacgaatagttacgatagtccttcaatgtatcgaaattttaaaatagtct 1517617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 46848488 - 46848400
Alignment:
Q  148 aaataaaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||| ||| ||||||||||| |||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||| ||||||||||    
T  46848488 aaatataaggggtaatagtcactttggtccctgaatgtgtaatgagtagtcaaaatagttcctcaatgtatcaaaatttcaaaatagtc 46848400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 30843911 - 30843830
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||||||| |||||| ||||||||| ||| ||||||||||||||||| || |||||||||||||| ||||||||||||||    
T  30843911 gtaatagtcactttggttcctgaatgtgtaatgagtagtcacaatagtctcttaatgtatcaaaattccaaaatagtctctg 30843830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 14984407 - 14984479
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaata 233  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| ||||| |||||||    
T  14984407 taatagtcattttggtcc-tgaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaata 14984479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 30669351 - 30669429
Alignment:
Q  154 aagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaat 232  Q
    |||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||  |||||||||| |||||| ||||||    
T  30669351 aagaggtaatagtcattttgatccctaaatgtgtaaggagtagtcacaatagtatctcaatgtattaaaattccaaaat 30669429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 51889755 - 51889828
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaa 231  Q
    |||||||||||||||| || |||||||| ||| |||||||||||||||||  |||||||||||||||| |||||    
T  51889755 ggtaatagtcattttgatctctgaatgtgtaaggagtagtcacaatagtctttcaatgtatcaaaattccaaaa 51889828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 29079378 - 29079312
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||||||||||||||||| | | |||||||||||| |||||||| |||| ||||||||||||||||    
T  29079378 gtaatagtcattttggtccataattgtataacgagtggtcacaattgtccttcaatgtatcaaaatt 29079312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 621963 - 621889
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||| ||||||| |||||||| ||| ||||||||| |||||||  |||||||||||||||| ||||||||||    
T  621963 taatagtcactttggtctctgaatgtgtaatgagtagtcataatagtc--tcaatgtatcaaaatttcaaaatagtc 621889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 26483037 - 26483112
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    |||||||||||||||||| |  ||||||||||||||| ||||||||||  | ||||||||||||||  ||||||||    
T  26483037 taatagtcattttggtccttagatgtataacgagtagacacaatagtcatttaatgtatcaaaattctaaaatagt 26483112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 31198069 - 31198148
Alignment:
Q  156 gaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||| |||||||||||  | ||||||||||||||  ||||||| ||||||| || |||||||||||||| |||||||||    
T  31198069 gaggtcatagtcattttaattcctgaatgtataacaggtagtcataatagtcactaaatgtatcaaaatttcaaaatagt 31198148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 43837081 - 43837148
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||||||||||||| ||| |||||||| |||||| || |||||||||||||| |||||| |||||||    
T  43837081 ggtaatagtcattttagtcactgaatgtgtaacgaataatcacaatagtccctaaatgtaccaaaatt 43837148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 20936629 - 20936563
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||||||||||||||||| | | ||| |||||||| |||||||| |||| ||||||||||||||||    
T  20936629 gtaatagtcattttggtccataattgtttaacgagtggtcacaattgtccttcaatgtatcaaaatt 20936563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 45681121 - 45681198
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaa-tagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||||| | |  |||| |||||||||||| ||| ||||| ||||||||||||||||| ||||||||||    
T  45681121 taatagtcattttggttcatttatgtttaacgagtagtctcaaatagtctctcaatgtatcaaaatttcaaaatagtc 45681198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 24255215 - 24255283
Alignment:
Q  155 agaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaa 223  Q
    ||||||||||||||||||  || ||||||||  ||||||| |||| |||||| ||||||||||||||||    
T  24255215 agaggtaatagtcattttactctctgaatgtgaaacgagtggtcataatagttcctcaatgtatcaaaa 24255283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 40619296 - 40619216
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||| | |||| ||| ||||||| ||| ||||||||| | || ||||||||||||||||||||  |||||||||||||    
T  40619296 taatagttactttgatccttgaatgtgtaatgagtagtcatattaatccctcaatgtatcaaaattttaaaatagtctctg 40619216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 23567406 - 23567355
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccct 210  Q
    ||||||||||||||| ||||||||||| |||||||| | |||||||||||||    
T  23567406 gtaatagtcattttgatccctgaatgtgtaacgagtggccacaatagtccct 23567355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 53706057 - 53705982
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||||||||||  ||| ||| |||| ||||| || |||||||||||| |||||| ||||| ||||||||||    
T  53706057 aatagtcattttggtctttgattgtgtaacaagtagccaaaatagtccctcactgtatcgaaatttcaaaatagtc 53705982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 3941929 - 3941841
Alignment:
Q  151 taaaagaggtaatagtcattttggtccctgaatgtataacga---gtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||| || |||||||||||||||||| ||||||||||| ||   || |||||| |||||| | ||||||||||||||  |||||||||    
T  3941929 taaaacagataatagtcattttggtccttgaatgtataaggagtggtcgtcacagtagtcctttaatgtatcaaaattttaaaatagtc 3941841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 14195030 - 14194953
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||||| |||| |||||| |  | ||||| ||||||||||| | |||||||||||||| ||||||||||    
T  14195030 ggtaatagtcattttgatccc-gaatgtgtgcctagtagccacaatagtcctttaatgtatcaaaatttcaaaatagtc 14194953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 14984760 - 14984716
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaata 204  Q
    |||||||||||||||||||||||||| |||  |||||||||||||    
T  14984760 taatagtcattttggtccctgaatgtgtaagaagtagtcacaata 14984716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 41898126 - 41898079
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtc 207  Q
    ||||||| |||||||||| ||||||| ||||||||| |||||||||||    
T  41898126 taatagttattttggtccttgaatgtgtaacgagtaatcacaatagtc 41898079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 47199726 - 47199785
Alignment:
Q  179 tgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctc 238  Q
    ||||||| ||| ||| |||||||||| | | |||||||||||||||| ||||||||||||    
T  47199726 tgaatgtgtaatgagaagtcacaataattcttcaatgtatcaaaatttcaaaatagtctc 47199785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 621601 - 621679
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||| || |||||||||| || ||| | ||| |||||||||||||||||| |  ||| ||||||||| ||||||||||    
T  621601 ggtaacaggcattttggtctctaaatttgtaatgagtagtcacaatagtcctttgatgaatcaaaatttcaaaatagtc 621679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 32537541 - 32537496
Alignment:
Q  189 acgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    |||||||||||||||||| |||||||||| ||||||| |||||||||    
T  32537541 acgagtagtcacaatagt-cctcaatgtaacaaaatttcaaaatagt 32537496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 38989763 - 38989805
Alignment:
Q  194 tagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||||||||| ||||||||||||||||  |||||||||    
T  38989763 tagtcacaatagtccatcaatgtatcaaaattttaaaatagtc 38989805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 21568639 - 21568562
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    ||||||||| ||| ||||||| |||| ||| || |||| ||||||||| | ||||||||||||| |  ||||||||||    
T  21568639 taatagtcactttcgtccctgcatgtgtaatgaatagtgacaatagtctcccaatgtatcaaaaatttaaaatagtct 21568562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 31186455 - 31186504
Alignment:
Q  187 taacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||| |||||| |||||||||  |||||||||||||||| ||||||||||    
T  31186455 taacaagtagttacaatagtctttcaatgtatcaaaatttcaaaatagtc 31186504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 48047788 - 48047861
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaata 233  Q
    ||||||||||||| ||||| |||||| ||| |||| | |||||| |||| |||||||| |||| || |||||||    
T  48047788 taatagtcattttagtccccgaatgtgtaaagagtggccacaattgtccttcaatgtaacaaacttccaaaata 48047861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 51890130 - 51890049
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||||||||||||||| |||||   || | |||  |||||||||||||| |||||  || || ||||||||||||||    
T  51890130 gtaatagtcattttggtcccttaatgtgccacaactagctacaatagtccctcagtgtattgaattttcaaaatagtctctg 51890049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 12832376 - 12832320
Alignment:
Q  163 tagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatc 219  Q
    ||||||||||||||||| ||||| |||  ||||| ||||||||||  ||||||||||    
T  12832376 tagtcattttggtccctaaatgtgtaataagtagacacaatagtctttcaatgtatc 12832320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 6699784 - 6699687
Alignment:
Q  140 ttggttaaaaataaaagagg-taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||| | ||| |||||||||||||||||||| |||||||||| ||||| || |||||||||||||| ||||||| || ||||||||||    
T  6699784 ttggttaaaaataataaagggtaatagtcattttggtccctaaatgtataacaagtaggcataatagtccctcaatatatcaaattttcaaaatagtc 6699687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 10219536 - 10219612
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| || ||||| |||||||||    
T  10219536 gtaatagtcattttggtccctgaatgtgtaacgagtagccacaatagtcccttaatgtgtcgaaatttcaaaatagt 10219612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 24285377 - 24285283
Alignment:
Q  136 atatttggttaaaaataaaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaa 230  Q
    |||||||||||||||||||||  |||||| |||||||||||||| ||||| |||| |||||| | | ||| ||||||| ||||||||||||||||    
T  24285377 atatttggttaaaaataaaaggcgtaataatcattttggtccctaaatgtgtaacaagtagttagagtagaccctcaacgtatcaaaattgcaaa 24285283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 516100 - 516022
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||  ||  ||||||| ||||| ||||||||||    
T  516100 ggtaatagtcattttggtccctgaatgtgtaacgagtagtcacaacagtaacttgatgtatcgaaattccaaaatagtc 516022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 19264829 - 19264748
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||||||||  |||| ||||||| ||||||||||||||||||||| || |||||||| |||||  |||||||||||||    
T  19264829 ggtaatagtcatttacgtccttgaatgtgtaacgagtagtcacaatagtctct-aatgtatcgaaattttaaaatagtctctg 19264748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 21020849 - 21020927
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||||||||||||||| ||||||||||| | | |||||||  || |||||||||||||  |||||||||    
T  21020849 ggtaatagtcattttggtccctgaatatataacgagtaattataatagtctttcgatgtatcaaaattttaaaatagtc 21020927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 26368924 - 26369002
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||||| ||| | |||||  ||||||||| ||| ||||||| |||||| ||||||||||||||||||||    
T  26368924 ggtaatagtcattttgatccttaaatgtggaacgagtagccacgatagtccttcaatgcatcaaaattgcaaaatagtc 26369002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 33807016 - 33806951
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||||||||| |||| ||||||||||||| ||||| || |||||||| |||||||||||||||||    
T  33807016 taatagtcattgtggttcctgaatgtataaagagtactcgcaatagtctctcaatgtatcaaaatt 33806951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 6524842 - 6524920
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||| ||||||||||| ||||||| |||  |||||||| ||||||| |||||||||| ||||||  |||||||||    
T  6524842 ggtaatagccattttggtccatgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattctaaaatagtc 6524920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 10067452 - 10067530
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||||  || |||  ||||||| |||||||||||| | ||||||||||||||||||||  |||||||||    
T  10067452 ggtaatagtcattttaatctctgggtgtataaggagtagtcacaacaatccctcaatgtatcaaaattctaaaatagtc 10067530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 10067829 - 10067747
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||||||||| |||  ||||||| |||| ||||  |||||||||| ||||||||||| |||||  |||||||||||||    
T  10067829 ggtaatagtcattttagtctttgaatgtgtaacaagtaaccacaatagtctctcaatgtatcgaaattttaaaatagtctctg 10067747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 7792013 - 7792087
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||||||||| || |||||||| |||   || || |||||||||||||||||||||||||||  ||||||||    
T  7792013 aatagtcattttgatctctgaatgtgtaagatgtcgtgacaatagtccctcaatgtatcaaaatttgaaaatagt 7792087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 9436844 - 9436770
Alignment:
Q  162 atagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||||| ||| ||||||   ||||||||||||||||||||| ||||||| ||| |||||  |||||||||    
T  9436844 atagtcattttagtctctgaataggtaacgagtagtcacaatagtctctcaatggatcgaaattttaaaatagtc 9436770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 24285377 - 24285323
Alignment:
Q  55 atatttggttaaaaataaaaggggtaatagtcattttcgtccctgaatgtataac 109  Q
    |||||||||||||||||||||| |||||| ||||||| |||||| ||||| ||||    
T  24285377 atatttggttaaaaataaaaggcgtaataatcattttggtccctaaatgtgtaac 24285323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 25084898 - 25084968
Alignment:
Q  155 agaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||| ||||||| |||||||||| || |||||||||||||||| | ||||||| || ||||||| ||||||    
T  25084898 agagataatagttattttggtccttggatgtataacgagtagttataatagtctcttaatgtattaaaatt 25084968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 27100802 - 27100724
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||||||||||| ||| | |||  |||||||| |||||| | ||| | |||||||||| ||||||||||    
T  27100802 ggtaatagtcattttggtccctaaatttgtaatcagtagtcataatagttcatcagtatatcaaaatttcaaaatagtc 27100724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 34937448 - 34937502
Alignment:
Q  179 tgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaata 233  Q
    ||||||| |||||||||||||||||||| | |||||||||| ||||| |||||||    
T  34937448 tgaatgtgtaacgagtagtcacaatagttcttcaatgtatccaaatttcaaaata 34937502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 33806649 - 33806726
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||| ||||| |||| ||||||| ||| |||||||||||||| ||| | |||||||| |||||  |||||||||    
T  33806649 gtaatagttattttagtccatgaatgtgtaaggagtagtcacaataatcctttaatgtatcgaaattctaaaatagtc 33806726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 19134256 - 19134336
Alignment:
Q  153 aaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaata 233  Q
    ||||| ||||||||| |||||||| || ||||| ||||||| |    || ||||||||||||||||||||||| |||||||    
T  19134256 aaagatgtaatagtctttttggtctctaaatgtgtaacgagaaacggcactagtccctcaatgtatcaaaattccaaaata 19134336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 20565877 - 20565798
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||||||||||| ||| ||||||   |||||||||||| |||||||| |||||||||| || ||  |||||||||||||    
T  20565877 taatagtcattttgttccttgaatggc-aacgagtagtcataatagtccatcaatgtatcgaatttttaaaatagtctctg 20565798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 6699784 - 6699733
Alignment:
Q  59 ttggttaaaaataa-aaggggtaatagtcattttcgtccctgaatgtataac 109  Q
    |||||||||||||| || |||||||||||||||| |||||| ||||||||||    
T  6699784 ttggttaaaaataataaagggtaatagtcattttggtccctaaatgtataac 6699733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 29920451 - 29920494
Alignment:
Q  192 agtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||    
T  29920451 agtagtcacaataatccttcaatgtatcaaaatttcaaaatagt 29920494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 9307571 - 9307493
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||| |||||||||| |||||||||||| ||||||||||| | ||| || || ||||||||  |||||  |||||||||    
T  9307571 ggtactagtcattttagtccctgaatgtgtaacgagtagttataatggtaccccaatgtattgaaattttaaaatagtc 9307493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 31141911 - 31141993
Alignment:
Q  154 aagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||| ||||||| |||||| ||  ||||||| |  ||||||||||||||||||| |||||||||| || || ||||| ||||    
T  31141911 aagagataatagttattttgatctttgaatgtgtgccgagtagtcacaatagtccatcaatgtatcgaactttcaaaaaagtc 31141993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 21020845 - 21020882
Alignment:
Q  73 aaggggtaatagtcattttcgtccctgaatgtataacg 110  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  21020845 aaggggtaatagtcattttggtccctgaatatataacg 21020882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 21237172 - 21237233
Alignment:
Q  175 tccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||||| |||  |||||||| ||||||| |||||||||| ||||||  |||||||||    
T  21237172 tccctgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattctaaaatagtc 21237233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 25085183 - 25085126
Alignment:
Q  168 attttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||||||||| |||||| ||| ||||| ||| |||||| ||| ||||||||||||||    
T  25085183 attttggtcccagaatgtgtaaggagtaatcataatagtaccttaatgtatcaaaatt 25085126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 515755 - 515803
Alignment:
Q  188 aacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||| ||||||||||||||  |||||||||||||||||  |||||||||    
T  515755 aacgggtagtcacaatagtatctcaatgtatcaaaattttaaaatagtc 515803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 20564658 - 20564733
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||||||||||   || ||||||| ||||||||| | | |||||||| |||||||||| ||||| |||||||||    
T  20564658 gtaatagtcattttaacccttgaatgtgtaacgagtaattataatagtcc-tcaatgtatcgaaatttcaaaatagt 20564733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 16127049 - 16127126
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  16127049 gtaatagtcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaaatagtc 16127126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 6217749 - 6217673
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||||||| ||||||| || ||| ||| |||||||||||||||||||||||||||| ||||||||||    
T  6217749 taatagtcattttggtccatgaatgtgtagcgaatagccacaatagtccctcaatgtatcaaaatttcaaaatagtc 6217673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 29686426 - 29686499
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaata 233  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||    
T  29686426 taatagtcactttggtccatgaatgtataatgagtagtcacaataatccctcaatgtattaaaatttcaaaata 29686499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 18970339 - 18970264
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||| | |||||||| |||||  ||||||||    
T  18970339 taatagtcattttggtccaggaatgtataacgagtagccacaatagtccttgaatgtatccaaattcaaaaatagt 18970264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 917265 - 917187
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    ||||||||||||||||| ||||||||| |||  | |||||||||| ||||||||||||||| |||||  ||||||||||    
T  917265 gtaatagtcattttggttcctgaatgtgtaaatattagtcacaatcgtccctcaatgtatcgaaattttaaaatagtct 917187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 18969983 - 18970056
Alignment:
Q  152 aaaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||| ||||||||||||||| ||||||| || |||||||| ||| ||||||||||||||||||| || |||||    
T  18969983 aaaaggggtaatagtcattttagtccctggatctataacgaatagccacaatagtccctcaatgtgtcgaaatt 18970056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 23159021 - 23159104
Alignment:
Q  152 aaaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||| ||||||||||| ||| |||||||||||| ||| || |||| | |||||||| ||||||||||||||||  ||||||||    
T  23159021 aaaaggggtaatagtcactttagtccctgaatgtgtaatgattagttataatagtccatcaatgtatcaaaattttaaaatagt 23159104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 17676894 - 17676820
Alignment:
Q  166 tcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||||||||| ||||||| |||||||||||||||| | |||||||||  ||| ||||  ||||||||||||||    
T  17676894 tcattttggtccttgaatgtgtaacgagtagtcacaacaatccctcaattaatcgaaatatcaaaatagtctctg 17676820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 16902987 - 16903028
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtca 199  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  16902987 ggtaatagtcattttagtccctgaatgtataacgagtagtca 16903028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 27001482 - 27001412
Alignment:
Q  170 tttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||| | ||||||| ||| ||||||||||||||||| ||| || ||||||||||  |||||||||||||    
T  27001482 tttggttcttgaatgtgtaatgagtagtcacaatagtctctcgatatatcaaaattttaaaatagtctctg 27001412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 2707857 - 2707820
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagta 195  Q
    |||||||||||||||||||||||||||| |||||||||    
T  2707857 ggtaatagtcattttggtccctgaatgtgtaacgagta 2707820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 7756783 - 7756702
Alignment:
Q  155 agaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||| |||||||||||||||||| |||||  ||||| ||  ||||||||| ||| |||||||  ||||| ||||||||||    
T  7756783 agaggtgatagtcattttggtccctaaatgtgcaacgaataaccacaatagttcctgaatgtattgaaatttcaaaatagtc 7756702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 42420636 - 42420559
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||||| ||||||||| |||||||| |||||  |||||||||| |||  | ||||||||||||||  ||||||||    
T  42420636 ggtaatagttattttggtctctgaatgtgtaacgtatagtcacaattgtctttaaatgtatcaaaattttaaaatagt 42420559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 37853564 - 37853512
Alignment:
Q  154 aagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagt 206  Q
    |||||||||||||||||||| | | |||||||| |||||||||||| ||||||    
T  37853564 aagaggtaatagtcattttgattcgtgaatgtaaaacgagtagtcataatagt 37853512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 655503 - 655436
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||| ||||||||||  || | |||| |||||||||||||||||||||| | |||||| |||||||||    
T  655503 ggtagtagtcattttaatcaccgaatatataacgagtagtcacaatagttcgtcaatgcatcaaaatt 655436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 35293915 - 35293840
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||| ||| |||||| |||||||| ||| ||||||  ||| ||||| |||| ||||| ||||||||||    
T  35293915 aatagtcattttagtctctgaatatataacgaatagccacaatgatccttcaatctatcgaaatttcaaaatagtc 35293840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 42420314 - 42420377
Alignment:
Q  168 attttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaa 231  Q
    |||||||||| ||||||| |||| | |||||| ||| ||||||||||||||||| ||| |||||    
T  42420314 attttggtccatgaatgtgtaacaaatagtcataatcgtccctcaatgtatcaacatttcaaaa 42420377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 16902986 - 16903020
Alignment:
Q  76 gggtaatagtcattttcgtccctgaatgtataacg 110  Q
    |||||||||||||||| ||||||||||||||||||    
T  16902986 gggtaatagtcattttagtccctgaatgtataacg 16903020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 11498134 - 11498057
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||| | |||||||||||||||||| |||  ||||  |  | |||||||||||||||||||||||  ||||||||    
T  11498134 ggtaataattattttggtccctgaatgtgtaagaagtaaccctagtagtccctcaatgtatcaaaattttaaaatagt 11498057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 14492009 - 14491940
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaa 230  Q
    |||| ||||||| || ||| |||||||||||||||| || ||||||| |||||| || ||||||| ||||    
T  14492009 aatattcattttcgttcctaaatgtataacgagtagccataatagtctctcaatttagcaaaattacaaa 14491940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 29714789 - 29714708
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtc-cctcaatgtatcaaaattgcaaaatagtctctgc 241  Q
    |||||||||||||||   ||||||| |||| |||||| |||||||||   |||||||||| ||||| |||||| ||||||||    
T  29714789 aatagtcattttggtttttgaatgtgtaaccagtagttacaatagtcttatcaatgtatcgaaatttcaaaattgtctctgc 29714708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 27554389 - 27554357
Alignment:
Q  193 gtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||||||||||||||| ||||||||||||||||    
T  27554389 gtagtcacaatagtccttcaatgtatcaaaatt 27554357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 32270747 - 32270679
Alignment:
Q  165 gtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaata 233  Q
    ||||| ||||||||||||| | ||||||||| ||| |||| |  ||||||||||| ||||| |||||||    
T  32270747 gtcatcttggtccctgaatatgtaacgagtaatcataataatttctcaatgtatcgaaatttcaaaata 32270679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 6728100 - 6728025
Alignment:
Q  162 atagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||| |||||| ||||||||| |||||||||||    
T  6728100 atagtcattttcgtccctgaatgtgtaacgaatagtcacaatagtccttcaatgaatcaaaattccaaaatagtct 6728025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 31134832 - 31134759
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaa 231  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||  ||||||| |||||| |||||    
T  31134832 ggtaatagtcattttggtccctgaatgtgtaacgagtagtcacgatagtcccaaaatgtataaaaattccaaaa 31134759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 27464019 - 27463933
Alignment:
Q  154 aagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||  || | ||||| ||||||||||||||||| ||||||||||||||    
T  27464019 aagaggtaatagtcattgtggtccctaaatgtgtaaggagtaaccatactagtctctcaatgtatcaaaatttcaaaatagtctctg 27463933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 45392286 - 45392351
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaa 223  Q
    |||||||||||||||| | ||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  45392286 ggtaatagtcattttgattcctgaatgtgtaatgagtagtcaaaatagtccctcaatgtatcaaaa 45392351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 32669782 - 32669832
Alignment:
Q  157 aggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtc 207  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  32669782 aggtaatagtcattttggtccatgaatgtgtaacgagtagtcacaatagtc 32669832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 32670086 - 32670016
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaa 230  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||| ||| ||||| ||||    
T  32670086 taatagtcattttgatccctgaatgtgtaacgagtattcacaatagtccttcaatggatcgaaatttcaaa 32670016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 35684993 - 35684919
Alignment:
Q  162 atagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||| ||||||||||||||||  || ||||||| |||||||||| |||||||||||||||  ||||||||||    
T  35684993 atagtcactttggtccctgaatgtgcaatgagtagttacaatagtccttcaatgtatcaaaatctcaaaatagtc 35684919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 6541006 - 6541082
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||  ||||||||||| |||||| |||||| |||||||| | |||||||||||||| | ||||||||    
T  6541006 taatagtcattttaatccctgaatgtgtaacgaatagtcataatagtcctttaatgtatcaaaatttccaaatagtc 6541082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 34177599 - 34177515
Alignment:
Q  152 aaaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||  |||||||||| ||||||  |  ||||| ||||||||||    
T  34177599 aaaaggggtaatagtcattttggtccctgaatgtgtaatgagtagctacaatagtccttcaatgatttgaaatttcaaaatagtc 34177515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 37228651 - 37228726
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||||||||||||||||||||||| ||| | ||||||| ||||||  | ||||||||||||||  ||||||||    
T  37228651 taatagtcattttggtccctgaatgtacaaccaatagtcactatagtcatttaatgtatcaaaattctaaaatagt 37228726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 38267519 - 38267444
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaata 233  Q
    |||||||||||||||||||||| ||| | ||   ||| ||||||||||||||||||||||| |||||| |||||||    
T  38267519 ggtaatagtcattttggtccctcaatatgtagtaagtggtcacaatagtccctcaatgtataaaaatttcaaaata 38267444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 19464225 - 19464295
Alignment:
Q  170 tttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||||| | ||||| |||| ||||||||||||||||| ||||||||||||||||  ||||| |||||||    
T  19464225 tttggtccttaaatgtgtaacaagtagtcacaatagtccttcaatgtatcaaaatttaaaaatggtctctg 19464295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 38901477 - 38901555
Alignment:
Q  157 aggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||| ||||||||||| ||| | || || |||||||||||||||||||||||||| |||||  ||||| |||||||||    
T  38901477 aggtagtagtcattttgatccttaaacgtgtaacgagtagtcacaatagtccctcattgtattgaaattacaaaatagt 38901555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 36144785 - 36144858
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaata 233  Q
    |||||||||||||||||| ||||| | ||| ||||| |||||||| || | ||||||||||||||| |||||||    
T  36144785 taatagtcattttggtccttgaatatgtaatgagtaatcacaatactctcccaatgtatcaaaattccaaaata 36144858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 30519042 - 30519118
Alignment:
Q  165 gtcattttggtccctgaatgtataacgagtagtc-acaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||||||| ||||||| |||| | ||||| |||||||||| | |||||||| ||||| ||||||||||||||    
T  30519042 gtcattttggtccttgaatgtgtaacaaatagtccacaatagtccttaaatgtatcgaaatttcaaaatagtctctg 30519118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 39162405 - 39162481
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||||||||||||||| ||||||  ||| ||||| |||||||||| | |||||||||  ||||| |||||||||    
T  39162405 gtaatagtcattttggtccttgaatgcgtaatgagtaatcacaatagtacttcaatgtattgaaatttcaaaatagt 39162481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 9890801 - 9890730
Alignment:
Q  163 tagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatag 234  Q
    ||||||||||||| |||||||||  ||||| || ||||||||||| |||||||||| ||||||  |||||||    
T  9890801 tagtcattttggttcctgaatgtggaacgattaatcacaatagtctctcaatgtattaaaattctaaaatag 9890730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 27900620 - 27900695
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||| |||||||| ||||| ||||| || |||| ||||||||| || ||||||||||||||  |||||||||    
T  27900620 aatagtcactttggtccttgaatatataaagaatagttacaatagtctcttaatgtatcaaaattttaaaatagtc 27900695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 34177278 - 34177353
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||| |||||||||| | ||||||| || |||||| |||  ||||| |||||||||| ||||||||||    
T  34177278 aatagtcattttagtccctgaatatgtaacgaggagccacaatcgtctttcaatatatcaaaatttcaaaatagtc 34177353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 8791994 - 8791928
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||||||||||||||| ||| |||||||||| ||||| || |||||||  ||| ||||||||||||    
T  8791994 gtaatagtcattttggtgccttaatgtataacaagtagccataatagtcgttcattgtatcaaaatt 8791928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 16192348 - 16192270
Alignment:
Q  162 atagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||||| || | ||||||| |||| |||||||| |||| ||| ||||||||||||||||  |||||||| ||||    
T  16192348 atagtcattttagtacttgaatgtgtaacaagtagtcataatattccttcaatgtatcaaaattttaaaatagtttctg 16192270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 50804264 - 50804342
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||| ||||| |||| ||||||| |||||||| ||||||||||||  | ||||| ||||||||  |||||||||    
T  50804264 ggtaatagttattttagtccttgaatgtgtaacgagtggtcacaatagtctttgaatgtgtcaaaattttaaaatagtc 50804342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 45679514 - 45679579
Alignment:
Q  170 tttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||| |||||||| |||||||||||||||||| ||| |||| |||| ||||||  ||||||||    
T  45679514 tttggtctctgaatgtgtaacgagtagtcacaataatccatcaacgtattaaaattttaaaatagt 45679579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 10018720 - 10018779
Alignment:
Q  177 cctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||| | |||| ||||||||||||||||  ||||||||||||||||  |||||||||    
T  10018720 cctgaatatgtaaccagtagtcacaatagtctatcaatgtatcaaaattttaaaatagtc 10018779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 33747277 - 33747340
Alignment:
Q  168 attttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaa 231  Q
    ||||||| || ||||||| |||| ||||||||||||||| | |||||||||| ||||| |||||    
T  33747277 attttggaccttgaatgtgtaacaagtagtcacaatagttcttcaatgtatcgaaatttcaaaa 33747340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 50155881 - 50155810
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaa 231  Q
    ||||| ||||||||||  |||||||  |||||||||| ||||||||||  ||||||||||||| || |||||    
T  50155881 taataatcattttggtttctgaatgcgtaacgagtagccacaatagtcattcaatgtatcaaactttcaaaa 50155810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 50194203 - 50194254
Alignment:
Q  147 aaaataaaagaggtaatagtcattttggtccctgaatgtataacgagtagtc 198  Q
    ||||||||||| |||||||| |||||||||||||||  ||||| ||||||||    
T  50194203 aaaataaaagaagtaatagttattttggtccctgaacatataaggagtagtc 50194254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 8778986 - 8779032
Alignment:
Q  194 tagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||| ||||||||||||| |||||||||| ||||||||| ||||    
T  8778986 tagtcacgatagtccctcaatatatcaaaatttcaaaatagtttctg 8779032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 6728108 - 6728071
Alignment:
Q  73 aaggggtaatagtcattttcgtccctgaatgtataacg 110  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  6728108 aaggggtgatagtcattttcgtccctgaatgtgtaacg 6728071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 9777211 - 9777146
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||||||||||||| ||| ||||||||| || |||||||| ||||||   ||||| ||||||||||    
T  9777211 taatagtcattttgatccttgaatgtattacaagtagtcataatagtttttcaatatatcaaaatt 9777146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 31134836 - 31134799
Alignment:
Q  73 aaggggtaatagtcattttcgtccctgaatgtataacg 110  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  31134836 aaggggtaatagtcattttggtccctgaatgtgtaacg 31134799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 34177599 - 34177566
Alignment:
Q  71 aaaaggggtaatagtcattttcgtccctgaatgt 104  Q
    ||||||||||||||||||||| ||||||||||||    
T  34177599 aaaaggggtaatagtcattttggtccctgaatgt 34177566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 38445271 - 38445198
Alignment:
Q  164 agtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    |||||||||| | |||||||||  ||| | ||||||||||||||| | |||||||| |||||  ||||||||||    
T  38445271 agtcattttgattcctgaatgtgcaacaaatagtcacaatagtcctttaatgtatcgaaattctaaaatagtct 38445198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 8234050 - 8234126
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||||||| | ||||| ||| |||||||| |||||  | ||| |||||| |||| | ||||||||||    
T  8234050 taatagtcattttggtccttaaatgtgtaatgagtagtcgcaataacctctctatgtataaaaaattcaaaatagtc 8234126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 13359495 - 13359559
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||||||||||||  |||| ||||| | |||||||||||||| |  |||| ||||||||||||||    
T  13359495 aatagtcattttgcgccctaaatgtgtgacgagtagtcacaacaacccctaaatgtatcaaaatt 13359559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 30050300 - 30050380
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||| |||||| ||  |||||||| |||| | ||||||||||| | | ||||||||||| ||||  |||||||||||||    
T  30050300 taatagacattttagtgtctgaatgtgtaacaaatagtcacaataattcttcaatgtatcataattttaaaatagtctctg 30050380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 30050699 - 30050623
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    |||||| |||||||||  ||||| | ||| || ||| || |||||||||| |||||||| ||||| |||||||||||    
T  30050699 aatagttattttggtctttgaatttgtaatgattagccaaaatagtcccttaatgtatcgaaatttcaaaatagtct 30050623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 33746808 - 33746876
Alignment:
Q  168 attttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||| || ||||||| |||||||||||||||||| ||  ||||||||   |||||| |||||||||    
T  33746808 attttggcccttgaatgtgtaacgagtagtcacaataatcattcaatgtagataaattgtaaaatagtc 33746876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 17488301 - 17488223
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||| |||||||||| ||||||||||| |||| |||||||||||||||||||||||||| | ||||| ||||||||||    
T  17488301 ggtaacagtcattttgctccctgaatgtgtaacaagtagtcacaatagtccctcaatgtagcgaaatttcaaaatagtc 17488223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 21601906 - 21601987
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||| ||||||||||||| ||||| | |||| | ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  21601906 ggtaatggtcattttggtcc-tgaatatgtaacaaatagtcacaatagtccatcaatgtatcaaaattccaaaatagtctctg 21601987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 21600745 - 21600667
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    ||||||||||| ||||||| |||||||| ||| || |||||| |||||||| |||||||||||||||| |||||||||||    
T  21600745 ggtaatagtcaatttggtctctgaatgtgtaatgattagtcataatagtccatcaatgtatcaaaatt-caaaatagtct 21600667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 2987251 - 2987171
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||||||||||| ||| |||||  ||||| |||||||||||||  |||||||||||||||||  |||||||||||||    
T  2987251 gtaatagtcattttggttcctaaatgtgaaacgattagtcacaatagt-tctcaatgtatcaaaattttaaaatagtctctg 2987171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 8340411 - 8340346
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||||||||||||||| | ||||||||||| |||||||||||| ||||| | ||||||||||||||    
T  8340411 taatagtcattttggttcttgaatgtataatgagtagtcacaacagtcctttaatgtatcaaaatt 8340346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 28802283 - 28802359
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||||||| ||| |||||||| |||| | ||||||||||||||| || |||||||||||||  |||||||||    
T  28802283 taatagtcattttagtcgctgaatgtgtaacaaatagtcacaatagtccatcgatgtatcaaaattttaaaatagtc 28802359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 4586748 - 4586827
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    ||||||||| |||||| ||| ||||||| ||||||||||| ||||||||| || ||||||| ||||||  ||||||||||    
T  4586748 ggtaatagttattttgatccttgaatgtgtaacgagtagttacaatagtctcttaatgtattaaaattttaaaatagtct 4586827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 21145743 - 21145663
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcaca--atagtccctcaatgtatcaaaattgcaaaatagtctc 238  Q
    |||||||||||||||| ||||||||| |||||||||| ||||  ||||||  |||| ||||| ||||| ||||||||||||    
T  21145743 taatagtcattttggttcctgaatgtgtaacgagtagccacaatatagtctatcaacgtatcgaaattccaaaatagtctc 21145663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 7574372 - 7574447
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||| ||||||||||| ||||||| |||| |||| ||| ||||||||| ||||||||| ||||| ||||||||||    
T  7574372 taatagacattttggtccttgaatgtgtaacaagtaatcataatagtcccacaatgtatc-aaatttcaaaatagtc 7574447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 8982377 - 8982309
Alignment:
Q  157 aggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||||||||||||||| ||  |||||||||||| || |||||||||||||  ||| |||||||||||||    
T  8982377 aggtaatagtcatttttgtttctgaatgtataatgattagtcacaatagtttctcgatgtatcaaaatt 8982309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 18080177 - 18080240
Alignment:
Q  155 agaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtat 218  Q
    ||||| ||||||||||||||||||| ||||| |||| | |||||||||| |||| |||||||||    
T  18080177 agaggcaatagtcattttggtccctaaatgtgtaacaaatagtcacaatggtccttcaatgtat 18080240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 41303259 - 41303181
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||| | ||||||||||||||| || ||| |||||   | |||||||||||||||||||||||||  |||||||||    
T  41303259 ggtaataattattttggtccctgaaggtgtaaggagtaacaataatagtccctcaatgtatcaaaattttaaaatagtc 41303181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 42844831 - 42844897
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||||||||||||| ||| | | |||||||||| | |||||||| |||| ||||||||||||||||    
T  42844831 gtaatagtcattttgatccataattgtataacgattggtcacaattgtccttcaatgtatcaaaatt 42844897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 21215898 - 21215974
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||||||  ||||| |  || |||||| ||||||||||| |||||||||  ||||| ||||||||||    
T  21215898 taatagtcattttggtcattgaatatggaatgagtagccacaatagtccttcaatgtattgaaatttcaaaatagtc 21215974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 21602278 - 21602206
Alignment:
Q  164 agtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||||| |||||||  ||| ||||| || ||| |||||||||| |||| ||||| ||||||||||    
T  21602278 agtcattttggtccttgaatgtgcaacaagtagccataatggtccctcaatatatcgaaatttcaaaatagtc 21602206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 3662324 - 3662391
Alignment:
Q  168 attttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    |||||||||||| | ||| ||| |||||  || |||||||||||||||||||||||||  ||||||||    
T  3662324 attttggtccctaattgtgtaaggagtaaccataatagtccctcaatgtatcaaaattttaaaatagt 3662391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 41302629 - 41302708
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    ||||||||| ||||||||   ||||||| ||||||||| |||||||||||  |||| |||| ||||||  ||||||||||    
T  41302629 ggtaatagttattttggtatatgaatgtgtaacgagtaatcacaatagtctttcaaagtattaaaattttaaaatagtct 41302708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 7603904 - 7603958
Alignment:
Q  171 ttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||| |||||||||||||| ||||||||  |||||||  ||||||||||||||||    
T  7603904 ttggaccctgaatgtataatgagtagtcggaatagtctttcaatgtatcaaaatt 7603958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 21600420 - 21600478
Alignment:
Q  178 ctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||  || |||| ||||||||||||||| ||||||||||||||  |||||||||    
T  21600420 ctgaatgtgcaatgagttgtcacaatagtcccttaatgtatcaaaattttaaaatagtc 21600478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 24303878 - 24303940
Alignment:
Q  168 attttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaa 230  Q
    ||||| |||||||||||| ||| | || ||||| ||||||| | |||||||||||||||||||    
T  24303878 attttagtccctgaatgtgtaaggcgttgtcactatagtccttaaatgtatcaaaattgcaaa 24303940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 36469423 - 36469493
Alignment:
Q  165 gtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||||| || |||||||||||| || |||| |||||| | ||||||| ||||||||||  ||||||||    
T  36469423 gtcattttgatctctgaatgtataatgattagttacaataattcctcaatatatcaaaattttaaaatagt 36469493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 7681118 - 7681041
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||| | |||||||||||||||||| |||  ||||  |  | |||||||||||||||||||||||  ||||||||    
T  7681118 ggtaataattattttggtccctgaatgtgtaagaagtaaccctagtagtccctcaatgtatcaaaattttaaaatagt 7681041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 33590090 - 33590167
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||||||||||||| ||  |||||| |  ||| | || ||||||||||| |||||||||| ||||||| ||||||||    
T  33590090 ggtaatagtcattttagtatctgaatatgcaacaaataatcacaatagtctctcaatgtattaaaattgtaaaatagt 33590167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 42442800 - 42442744
Alignment:
Q  179 tgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||| ||||| || ||||||||||||||  |||||||||||||||  |||||||||    
T  42442800 tgaatatataatgaatagtcacaatagtctttcaatgtatcaaaatctcaaaatagt 42442744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 34703628 - 34703707
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctct 239  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||||| |||||||||| |||||  ||||||||||||    
T  34703628 gtaatagtcattttgatccataaatgtataacgagtagtcacaatagtccatcaatgtatc-aaattttaaaatagtctct 34703707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 18942735 - 18942802
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||||||||||||||||||||||||||| ||| || |||||| ||||||| |||||||||||||||||    
T  18942735 ggtaatagtcattttggtccctgaatgtgtaaggaatagtcataatagtcactcaatgtatcaaaatt 18942802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 8062978 - 8062896
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||| |||||||||| ||||||| |||||||||||||||||||||  ||||||||| ||||||  |||||||| ||||    
T  8062978 ggtaatagttattttggtccttgaatgtgtaacgagtagtcacaatagtctgtcaatgtattaaaattttaaaatagtatctg 8062896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 38838754 - 38838672
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||| ||  ||||||||| ||||||  |||||||||||||    
T  38838754 ggtaataattattttggtccctgaatgtgtaacgagtagtcacaatattctatcaatgtattaaaattttaaaatagtctctg 38838672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 30840007 - 30839950
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgta 217  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  30840007 taatagtcattttggtccctgaatgtataacgaatagttacaatagtctctcaatgta 30839950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 20889520 - 20889444
Alignment:
Q  164 agtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||| | |||||||||||| |||| ||||| |||||||||||||||||||||||| ||| ||||||| ||||||    
T  20889520 agtcattgttgtccctgaatgtgtaacaagtagccacaatagtccctcaatgtatcaacatttcaaaataatctctg 20889444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 32996608 - 32996528
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||| ||||||||||||| ||||||| ||| || |||| ||||||||||||||||| |||||||||  |||||||||||||    
T  32996608 taatggtcattttggtccttgaatgtctaatgaatagtgacaatagtccctcaatgcatcaaaattctaaaatagtctctg 32996528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 46720125 - 46720065
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtat 218  Q
    ||||||||||||| |||| |||||||| ||||| |||||||||||||||||||||||||||    
T  46720125 ggtaatagtcattatggttcctgaatgaataacaagtagtcacaatagtccctcaatgtat 46720065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 45540099 - 45540036
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaa 223  Q
    ||||| |||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||||    
T  45540099 taataatcattttggtccctaaatgtataacgagttgacacaatagtccctaaatgtatcaaaa 45540036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 19303665 - 19303600
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||||||||||||||||| |||||||||||| |||| | |||||||| |||||||||||||||||||    
T  19303665 gtaatagtcattttggtctctgaatgtataaggagtggccacaatag-ccctcaatgtatcaaaatt 19303600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 14669237 - 14669313
Alignment:
Q  164 agtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||||||||||| ||||||| |||||||||||||||| | |||||||||  ||| ||||  ||||||||||||||    
T  14669237 agtcattttggtccttgaatgtgtaacgagtagtcacaacaatccctcaattaatcgaaatatcaaaatagtctctg 14669313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 1247507 - 1247575
Alignment:
Q  169 ttttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    ||||||||||||||| | ||||||||||||||||||||  || ||||||| ||||||  ||||||||||    
T  1247507 ttttggtccctgaatatgtaacgagtagtcacaatagtttcttaatgtattaaaattttaaaatagtct 1247575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 5358207 - 5358287
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||| |||  ||||| ||||| ||| || |||| |||||||||| ||||||||||||||||  |||||||||||||    
T  5358207 taatagtcactttcatccctaaatgtgtaatgaatagttacaatagtccttcaatgtatcaaaattttaaaatagtctctg 5358287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 21401749 - 21401816
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||||||||||||||||| || ||||| ||||||||||  |||||||||||||| | |||| |||||    
T  21401749 ggtaatagtcattttggtctctaaatgtgtaacgagtagctacaatagtccctcactatatcgaaatt 21401816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 23190965 - 23191028
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaa 223  Q
    |||||||||||||  || |||||||||||||||||||||| |||||| | ||||||||| ||||    
T  23190965 taatagtcatttttatctctgaatgtataacgagtagtcataatagttcgtcaatgtataaaaa 23191028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 12849814 - 12849744
Alignment:
Q  170 tttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    |||||| | |||||||  || |||||||||||||||||  | |||||||||||||| ||||||||||||||    
T  12849814 tttggttcttgaatgtgcaatgagtagtcacaatagtcttttaatgtatcaaaattacaaaatagtctctg 12849744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 12927899 - 12927837
Alignment:
Q  174 gtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||| ||||||| || | ||||||||||||||||| || ||||||||||||| ||||||||||    
T  12927899 gtccttgaatgtgtagcaagtagtcacaatagtccttcgatgtatcaaaattccaaaatagtc 12927837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 1344683 - 1344644
Alignment:
Q  191 gagtagtcacaatagtccctcaatgtatcaaaattgcaaa 230  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  1344683 gagtagtcacaatagtccatcaatgtatcaaaatttcaaa 1344644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 6983273 - 6983340
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||||||||||||| |||| || |||| ||| |||||  ||||||||||| |||||| |||||||||    
T  6983273 ggtaatagtcattttagtccatggatgtgtaaagagtaaccacaatagtccttcaatgaatcaaaatt 6983340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 12927603 - 12927650
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtcc 208  Q
    |||||||| |||||||||||||||  | ||||||||||||||||||||    
T  12927603 aatagtcactttggtccctgaatgagtgacgagtagtcacaatagtcc 12927650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 39608687 - 39608612
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    ||||| ||||||| |||| ||||||| ||| ||||||| ||||||||   ||||||||||||||||  ||||||||    
T  39608687 taataatcattttagtccttgaatgtgtaaggagtagttacaatagtttttcaatgtatcaaaattttaaaatagt 39608612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 27376223 - 27376300
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    ||||||||| |||  ||||| ||||||||| ||||||| | |||||| | | ||||||| |||||| |||||||||||    
T  27376223 taatagtcactttaatcccttaatgtataatgagtagttaaaatagttctttaatgtattaaaatttcaaaatagtct 27376300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 40355180 - 40355139
Alignment:
Q  156 gaggtaatagtcattttggtccctgaatgtataacgagtagt 197  Q
    |||||||||||||||||||||  ||||||| |||||||||||    
T  40355180 gaggtaatagtcattttggtctttgaatgtgtaacgagtagt 40355139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 24127152 - 24127212
Alignment:
Q  158 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtat 218  Q
    |||||||||||||||| ||| | |||||  |||||| || ||||||||||| |||||||||    
T  24127152 ggtaatagtcattttgatccgtaaatgtgcaacgagcaggcacaatagtccatcaatgtat 24127212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 26904931 - 26905022
Alignment:
Q  145 taaaaataaaagaggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    ||||||| | || ||||||||| | ||||| || ||||||| |||  | |||||| |||||||  |||||||||||||||| |||||||||||    
T  26904931 taaaaattataggggtaatagtgactttggaccatgaatgtgtaataattagtcataatagtca-tcaatgtatcaaaatttcaaaatagtct 26905022  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 29196758 - 29196818
Alignment:
Q  165 gtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||| ||||||||  |||||| |||||| |||||||||||||   ||||||||||||||||    
T  29196758 gtcactttggtcctcgaatgtgtaacgaatagtcacaatagtttttcaatgtatcaaaatt 29196818  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 30840012 - 30839976
Alignment:
Q  74 aggggtaatagtcattttcgtccctgaatgtataacg 110  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  30840012 agggataatagtcattttggtccctgaatgtataacg 30839976  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 39791827 - 39791902
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtct 237  Q
    |||||||||||| |||| ||||||| ||||  |||  |||||||||| ||||||||||  ||||| |||||||||||    
T  39791827 aatagtcattttcgtcc-tgaatgtgtaacaggtaaccacaatagtctctcaatgtattgaaattccaaaatagtct 39791902  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 49078270 - 49078226
Alignment:
Q  181 aatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||| ||| ||||||| |||||||| ||||||||||||||||||    
T  49078270 aatgtgtaatgagtagttacaatagttcctcaatgtatcaaaatt 49078226  T

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Target: scaffold0329 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 6196 - 6272
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    |||||||||||| |||| || |||||  ||||||||||| ||||||||| ||||||||||||||||  |||||||||    
T  6196 taatagtcatttcggtctctcaatgtgcaacgagtagtcccaatagtccatcaatgtatcaaaattttaaaatagtc 6272  T

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Target: scaffold0329; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 6547 - 6471
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtc 236  Q
    ||||||||||||| || ||||||||| ||| || |||||| |||||||| |||||| ||||||||| ||||||||||    
T  6547 taatagtcattttagtacctgaatgtgtaatgaatagtcataatagtccttcaatgaatcaaaatttcaaaatagtc 6471  T

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Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 20536 - 20610
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    |||||||| |||| ||||||||||  | ||||||||| | |||||||||||||||| || |||||||||||||||    
T  20536 aatagtcactttgatccctgaatgagtgacgagtagttataatagtccctcaatgtgtcgaaattgcaaaatagt 20610  T

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Target: scaffold0045; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 20910 - 20845
Alignment:
Q  160 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    ||||||| | |||||||||||||||| || | |||||||| |||||||| ||||| ||||||||||    
T  20910 taatagttaatttggtccctgaatgtgtagcaagtagtcaaaatagtccttcaatatatcaaaatt 20845  T

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Target: scaffold0086 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 21964 - 21898
Alignment:
Q  159 gtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||| ||||||||||||| |||||||| |||  ||||||||||||||||  ||||| ||||||||||    
T  21964 gtaaaagtcattttggtctctgaatgtttaagaagtagtcacaatagtctttcaatatatcaaaatt 21898  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 29185 - 29255
Alignment:
Q  165 gtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagt 235  Q
    |||| |||||||| ||| |||||| | ||||||||||||||||| || | ||||||||||| |||||||||    
T  29185 gtcactttggtccttgagtgtatagcaagtagtcacaatagtccttcgacgtatcaaaatttcaaaatagt 29255  T

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Target: scaffold0252 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 17373 - 17301
Alignment:
Q  162 atagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatag 234  Q
    ||||||||||||||||||||||||  ||| ||||||  |||||||  |||||||||| ||||||  |||||||    
T  17373 atagtcattttggtccctgaatgtgcaacaagtagtagcaatagtttctcaatgtattaaaattctaaaatag 17301  T

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Target: scaffold0384 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 7687 - 7632
Alignment:
Q  185 tataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 240  Q
    ||||||||||||||||||||||  ||||||| || |||||| ||||||| ||||||    
T  7687 tataacgagtagtcacaatagtttctcaatgcattaaaatttcaaaataatctctg 7632  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 349272 - 349225
Alignment:
Q  161 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtcc 208  Q
    |||||||| |||||||||||||||  | ||||||||||||||||||||    
T  349272 aatagtcactttggtccctgaatgactgacgagtagtcacaatagtcc 349225  T

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Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 348934 - 349003
Alignment:
Q  164 agtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaata 233  Q
    ||||| ||| |||| ||| |||||| | ||||||||||||||||| || | ||||||||||| |||||||    
T  348934 agtcactttagtccttgagtgtatagcaagtagtcacaatagtccttcgacgtatcaaaattccaaaata 349003  T

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Target: scaffold0687 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 1588 - 1642
Alignment:
Q  171 ttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 225  Q
    |||| |||||||||||||| ||||||||  |||||||  ||||||||||||||||    
T  1588 ttggaccctgaatgtataatgagtagtcggaatagtctttcaatgtatcaaaatt 1642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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