View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9411_low_10 (Length: 442)

Name: NF9411_low_10
Description: NF9411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9411_low_10
NF9411_low_10
[»] chr6 (8 HSPs)
chr6 (18-421)||(28069712-28070130)
chr6 (255-421)||(27910068-27910229)
chr6 (304-426)||(27998865-27998987)
chr6 (304-427)||(28014333-28014456)
chr6 (255-426)||(28030062-28030230)
chr6 (304-417)||(28088681-28088794)
chr6 (144-205)||(28030315-28030376)
chr6 (299-401)||(28531229-28531331)
[»] chr5 (1 HSPs)
chr5 (304-426)||(1437846-1437968)
[»] chr8 (2 HSPs)
chr8 (304-420)||(36596770-36596889)
chr8 (144-205)||(36603920-36603982)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 28070130 - 28069712
Alignment:
Q  18 tataatgcaattgtgtctatcaattgagctatgttcaaagtgacaaattgttttcaaattttgt-------------gtcaaaa-tgacacgaccctaat 103  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||             ||||||| |||||||||||||||    
T  28070130 tataatgcaattgtgtctatcaattgagctatactcaaagtgacaaattgttttcaaattttgttgtttcattttgtgtcaaaaatgacacgaccctaat 28070031  T
Q  104 tttaaaacnnnnnnnnnnc-ctatcatttaccataattggcatgagacatctgcattaacttttgtacaaaagttttcgtatcaagttacattgtttatc 202  Q
    ||||||||            |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  28070030 tttaaaacctttttttttttctatcatttaccataattggtatgcgacatctgcattaacttttgtacaaaagttttcgtatcaagttaccgtgtttatc 28069931  T
Q  203 ttcttcatagctccctcattatgttgtttcgtaaagaagattcattttaggg-aaaatgtatgtataattacaactgaaggaagaaaataaaagaacaaa 301  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28069930 ttcttcatagctccctcattatgttgttttgtaaagaagattcattttagggaaaaatgtatgtataattacaactgaaggaagaaaataaaagaacaaa 28069831  T
Q  302 ttaaatgcatacctgaaatccccaaaagagtgcatacacatatttgttgatcaccttagtttctatagtaagtggtatagcattggcatagattccataa 401  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28069830 tt-aatgcatacctgaaatccccaaaagagtgcatacacatatttgttgatcaccttagtttctatagtaagtggtatagcatttgcatagattccataa 28069732  T
Q  402 gaaaaagcaccagatgtggc 421  Q
    ||||||||||||||||||||    
T  28069731 gaaaaagcaccagatgtggc 28069712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 255 - 421
Target Start/End: Complemental strand, 27910229 - 27910068
Alignment:
Q  255 aaaatgtatgtataattacaactgaaggaagaaaataaaagaacaaattaaatgcatacctgaaatccccaaaagagtgcatacacatatttgttgatca 354  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||     ||||||||| |||||||||||||||||||||||||||||||||||||    
T  27910229 aaaatgtatatataattacaactaaaggaagaaaataaaagaacaaat-----gcatacctggaatccccaaaagagtgcatacacatatttgttgatca 27910135  T
Q  355 ccttagtttctatagtaagtggtatagcattggcatagattccataagaaaaagcaccagatgtggc 421  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27910134 ccttagtttctatagtaagtggtatagcatttgcatagattccataagaaaaagcaccagatgtggc 27910068  T

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Target: chr6; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 304 - 426
Target Start/End: Complemental strand, 27998987 - 27998865
Alignment:
Q  304 aaatgcatacctgaaatccccaaaagagtgcatacacatatttgttgatcaccttagtttctatagtaagtggtatagcattggcatagattccataaga 403  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  27998987 aaatgtatacctggaatccccaaaagagtgcatacacatatttgttgatcaccttagtttctatagtaagtggtatggcattgccataaattccataaga 27998888  T
Q  404 aaaagcaccagatgtggcattca 426  Q
    |||||||||||||||||||||||    
T  27998887 aaaagcaccagatgtggcattca 27998865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 304 - 427
Target Start/End: Complemental strand, 28014456 - 28014333
Alignment:
Q  304 aaatgcatacctgaaatccccaaaagagtgcatacacatatttgttgatcaccttagtttctatagtaagtggtatagcattggcatagattccataaga 403  Q
    ||||||||||||| |||||||||||||||| |||||| ||||| ||||||  | |||||||| |||||||||||||||||||||||||||||||||||||    
T  28014456 aaatgcatacctggaatccccaaaagagtgaatacacgtattttttgatccacctagtttctttagtaagtggtatagcattggcatagattccataaga 28014357  T
Q  404 aaaagcaccagatgtggcattcat 427  Q
    ||||||||||||||||||||||||    
T  28014356 aaaagcaccagatgtggcattcat 28014333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 255 - 426
Target Start/End: Complemental strand, 28030230 - 28030062
Alignment:
Q  255 aaaatgtatgtataattacaactgaaggaagaaaataaaagaacaaattaaatgcatacctgaaatccccaaaagagtgcatacacatatttgttgatca 354  Q
    ||||||||| || ||||||||||||| |||||||||| || |||||   ||||||||||||| ||||||||||||| |||||||| |||||| |||  ||    
T  28030230 aaaatgtatata-aattacaactgaacgaagaaaatataa-aacaaca-aaatgcatacctggaatccccaaaagactgcatacatatatttcttggcca 28030134  T
Q  355 ccttagtttctatagtaagtggtatagcattggcatagattccataagaaaaagcaccagatgtggcattca 426  Q
    || ||||||||||||||||| ||| |||||||||||| |||||||||  || |||||||||||||| |||||    
T  28030133 ccgtagtttctatagtaagttgtacagcattggcatatattccataattaatagcaccagatgtggaattca 28030062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 304 - 417
Target Start/End: Complemental strand, 28088794 - 28088681
Alignment:
Q  304 aaatgcatacctgaaatccccaaaagagtgcatacacatatttgttgatcaccttagtttctatagtaagtggtatagcattggcatagattccataaga 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| ||| ||||  |  ||| ||||||||||     
T  28088794 aaatgcatacctgaaatccccaaaagagtgcatacacatatttgttgaccaccctagtttctatcgtaagtagtacagcagcgttataaattccataagc 28088695  T
Q  404 aaaagcaccagatg 417  Q
    ||||||||||||||    
T  28088694 aaaagcaccagatg 28088681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 28030376 - 28030315
Alignment:
Q  144 atgagacatctgcattaacttttgtacaaaagttttcgtatcaagttacattgtttatcttc 205  Q
    ||||||||||  |||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  28030376 atgagacatccacattaacttttgcacaaaagttttcgtatcaaattactttgtttatcttc 28030315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 401
Target Start/End: Complemental strand, 28531331 - 28531229
Alignment:
Q  299 aaattaaatgcatacctgaaatccccaaaagagtgcatacacatatttgttgatcaccttagtttctatagtaagtggtatagcattggcatagattcca 398  Q
    |||| ||||||  ||||| |||||||||||  | | ||| ||||||||||||| ||| |||||||| |  ||||| |||| |||| || |||||||||||    
T  28531331 aaatgaaatgctaacctgcaatccccaaaaatgagaatatacatatttgttgaccacgttagtttcaaaggtaagcggtacagcagtgacatagattcca 28531232  T
Q  399 taa 401  Q
    |||    
T  28531231 taa 28531229  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 304 - 426
Target Start/End: Complemental strand, 1437968 - 1437846
Alignment:
Q  304 aaatgcatacctgaaatccccaaaagagtgcatacacatatttgttgatcaccttagtttctatagtaagtggtatagcattggcatagattccataaga 403  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||    
T  1437968 aaatgcatacctggaatccccaaaacagtgcatacacatatttgctgatcaccctagtttctatcgtaagtggtacagcattggcatagattccataaga 1437869  T
Q  404 aaaagcaccagatgtggcattca 426  Q
    |||| ||||||||| || |||||    
T  1437868 aaaaacaccagatgaggaattca 1437846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 420
Target Start/End: Complemental strand, 36596889 - 36596770
Alignment:
Q  304 aaatgcatacctgaaatccccaaaagagtgcatacacatatttgttgatcaccttagtttctatagtaa---gtggtatagcattggcatagattccata 400  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||| | | |||||  ||||||||||||||   ||  || | |||||||||| ||||||||    
T  36596889 aaatgtatacctggaatccccaaaagagtgcatgcacatatttctcggtcacccaagtttctatagtaaattgtactacaacattggcatatattccata 36596790  T
Q  401 agaaaaagcaccagatgtgg 420  Q
    |   ||||||||||||||||    
T  36596789 atttaaagcaccagatgtgg 36596770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 36603982 - 36603920
Alignment:
Q  144 atgagacatctgcattaacttttgtacaaaa-gttttcgtatcaagttacattgtttatcttc 205  Q
    ||||||||||  | |||||||||| |||||| ||||||||||||| |||| ||||||||||||    
T  36603982 atgagacatccacgttaacttttgcacaaaaagttttcgtatcaaattactttgtttatcttc 36603920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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