View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9411_low_11 (Length: 401)
Name: NF9411_low_11
Description: NF9411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9411_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 80 - 391
Target Start/End: Complemental strand, 50269670 - 50269366
Alignment:
| Q |
80 |
tcctagaagatggtcaatggtgtggcttgtgtaacgag-tagaacatttgtgtgacattgtggtgtcaatgttatgtgatattgatcaaccatacaggtg |
178 |
Q |
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| T |
50269670 |
tcctagaagatggtcaatggtgtggcttgtgtatcgaggtagaatatttgtgtgacattgtggtgtcaatgttatgtgatattgatcaactacacaggtg |
50269571 |
T |
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| Q |
179 |
ccatgagaacatgagaacttttatatgtaagggggcgatgcaagcaaatatatcttttagtaagacgcgnnnnnnngtatcaaactagatggtgtcagtt |
278 |
Q |
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| T |
50269570 |
ccatgagagc--------ttttatatgtccgggggcgatgcaagcaaatatatcttttagtaagacat-tttttttgtatcaaactagatggtgtcaatt |
50269480 |
T |
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| Q |
279 |
agccctacatcgtatggtttgatttattttatctcatttgaggctaatagttctttttaaagtcggctaaatttagacgttttt-aatcttagagtttgt |
377 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
50269479 |
agccctacatcgtatggtttaatttattttatctcatttgaggctaatagttctttttaaagtcggctaaatttaaacgtttttaaatcttagagtttgt |
50269380 |
T |
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| Q |
378 |
cattgtgttctctg |
391 |
Q |
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| T |
50269379 |
cattgtgttctctg |
50269366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 27023338 - 27023391
Alignment:
| Q |
119 |
agaacatttgtgtgacattgtggtgtcaatgttatgtgatattgatcaaccata |
172 |
Q |
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| T |
27023338 |
agaatatttgggtgatattgtggtgttaatattatgtgatattgatcaatcata |
27023391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 12144301 - 12144262
Alignment:
| Q |
129 |
tgtgacattgtggtgtcaatgttatgtgatattgatcaac |
168 |
Q |
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| T |
12144301 |
tgtgacattgtggtgtcaatttcatgtgatattgatcaac |
12144262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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