View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9411_low_12 (Length: 336)
Name: NF9411_low_12
Description: NF9411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9411_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 36718615 - 36718941
Alignment:
| Q |
1 |
accatgacaaacttttccatacaccttatttaactactccataagattgaaaagtttttcggcaaagccttatgcacgcgtcagaagtaggtccaccgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
36718615 |
accatgacaaacttttccatacaccttatttaactactccataagattgaaaactttttcggcaaagccttctgcacgcgtcagaactgggtccaccgaa |
36718714 |
T |
|
| Q |
101 |
tgccataaatattgcttgataatagaccgaccgagctgaataatttccacggttgctaatcctccaaattggaaattattatcat-----attaaatttg |
195 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
36718715 |
tgccataaatattgcttgataataggctgaccgagctgaataatttctacggttgctaatcctccaaattggcaattattatcatgaatgattaaatttg |
36718814 |
T |
|
| Q |
196 |
ctaccttcataatttttgtccctaggattggtggtgacatcaaaaaagcattcgcattgtcacgaagccatggttgataccaaacactaacatctgagtc |
295 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36718815 |
ctaccttcatattttttgtccctaggattggtggtgacatcaaaaaagcattcgcgttgtcacgaagccatggttgataccaaacactaacatctgagtc |
36718914 |
T |
|
| Q |
296 |
atctatgattttccattttactcctcc |
322 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
36718915 |
atctatgattttccattttactcctcc |
36718941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University