View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9411_low_16 (Length: 308)
Name: NF9411_low_16
Description: NF9411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9411_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 102 - 299
Target Start/End: Original strand, 7707366 - 7707564
Alignment:
| Q |
102 |
tcaataatgtacatttaaaacggttttgtaaatacaactcactgaattcacaatactattcttctgcatactgta-tcttcttttttagtattgtcgtta |
200 |
Q |
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| T |
7707366 |
tcaataatgtacatttaaaacggttttgtaaatacaactcactgaatccacaatactattcttctacgtactgtattttttttttttagtattattgtta |
7707465 |
T |
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| Q |
201 |
acaacatattgaaacaagnnnnnnnntacttttaaaatatttattctctttccgtcaagtagtctagtgactaaattttacctttaataagagtataat |
299 |
Q |
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| T |
7707466 |
acaacattttgaaacaagaaaaaaaatacttttaaaatatttattctctttccgtcaagtagtctagtgactaaattttaccctaaataggagtataat |
7707564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 7707297 - 7707382
Alignment:
| Q |
1 |
tatgttctatattaacttctttagaaaaatagaaacacaaatatacaaatttcaaattacacaatgttatcaataatgtacattta |
86 |
Q |
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| T |
7707297 |
tatgttctatattaacttctttagaaaaatagaaacacaaatatacaaatttcaaattacacaatgttatcaataatgtacattta |
7707382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 7703509 - 7703576
Alignment:
| Q |
20 |
tttagaaaaatagaaacacaaatatacaaattt-caaattacacaatgttatcaataatgtacattta |
86 |
Q |
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| T |
7703509 |
tttaaaaaaatagaaacccaaacatacaaattttcaaattacacaatattatcaataatgtacattta |
7703576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 7703560 - 7703622
Alignment:
| Q |
102 |
tcaataatgtacatttaaaacggttttgtaaatacaactcactgaattcacaatactattcttct |
166 |
Q |
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| T |
7703560 |
tcaataatgtacatttaaaacggtcttgtaagtagagctcattgaat--ccaatactattcttct |
7703622 |
T |
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