View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9411_low_17 (Length: 306)

Name: NF9411_low_17
Description: NF9411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9411_low_17
NF9411_low_17
[»] chr4 (4 HSPs)
chr4 (18-306)||(12032050-12032338)
chr4 (77-306)||(12023720-12023950)
chr4 (185-293)||(15788399-15788508)
chr4 (91-162)||(15788535-15788608)
[»] chr2 (2 HSPs)
chr2 (99-281)||(27867429-27867618)
chr2 (185-298)||(9501493-9501607)
[»] chr3 (2 HSPs)
chr3 (185-283)||(14426582-14426681)
chr3 (197-241)||(5633609-5633654)
[»] chr6 (2 HSPs)
chr6 (185-232)||(12972920-12972967)
chr6 (228-298)||(18388613-18388682)
[»] chr5 (2 HSPs)
chr5 (176-298)||(24840706-24840829)
chr5 (185-241)||(16604129-16604185)
[»] chr8 (2 HSPs)
chr8 (175-305)||(16053356-16053487)
chr8 (179-248)||(41510265-41510333)
[»] chr7 (1 HSPs)
chr7 (194-251)||(7955267-7955323)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 12032050 - 12032338
Alignment:
Q  18 gaaaaatcaaatacggtgacattcctctcaaaatcaaacatctacaagagtatttggagacctataagctatctttgagcaaaatatatttccactttct 117  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12032050 gaaaaaccaaatatggtgacattcctctcaaaatcaaacatctacaagagtatttggagacctataagctatctttgagcaaaatatatttccactttct 12032149  T
Q  118 attatatttctttcatatatgcgttccatgtggattgatatttttcctctttaggttgttctctatagactatcagttatattatcatacacatgagaca 217  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  12032150 attatatttctttcatatatgtgttccatgtggattgatatttttcctctttaggttgttctctacggactatcagttatattatcatacacatgagaca 12032249  T
Q  218 cttgttttgataccttgagcctttttcaagccactcagaattattattgtatatcatttgtgaaactagtttgagcctccaagcaatat 306  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12032250 cttgttttgataccttgagtctttttcaagccactcagaattattattgtatatcatttgtgaaactagtttgagcctccaagcaatat 12032338  T

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Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 77 - 306
Target Start/End: Complemental strand, 12023950 - 12023720
Alignment:
Q  77 acctataagctatctttgagcaaaatatatttccactttctattatatttctttcatatatgcgttccatgtggattgatatttttcctctttaggttgt 176  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  12023950 acctataagctatctttgagcaaaatatatttccactttttactatatttctttcatatatgtgttccatgtggattgctatttttcctctttaggttgt 12023851  T
Q  177 tctctatagactatcagttatattatcatacacatgagacacttgttttgataccttgagcctttttcaagccactcagaattattattg-tatatcatt 275  Q
    ||||||  |||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | |||||||||||| |||||||||    
T  12023850 tctctacggactatcaattatattatcatacacatgagacacttgttttggtactttgagcctttttcaagccacccggaattattattgttatatcatt 12023751  T
Q  276 tgtgaaactagtttgagcctccaagcaatat 306  Q
    |||||||||||||||||||||||||||||||    
T  12023750 tgtgaaactagtttgagcctccaagcaatat 12023720  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 15788508 - 15788399
Alignment:
Q  185 gactatcagttatattatcatacacatgagacacttgttttgataccttgagcctttttcaagccactcagaattattattg-tatatcatttgtgaaac 283  Q
    ||||||||  |||||||||||||||  ||||||||||||||| |||||||||| || || ||||||| |  | ||||||||| |||||| |||||||||     
T  15788508 gactatcatatatattatcatacacgcgagacacttgttttggtaccttgagctttatttaagccaccctaatttattattgttatatcctttgtgaaat 15788409  T
Q  284 tagtttgagc 293  Q
    || |||||||    
T  15788408 tactttgagc 15788399  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 15788608 - 15788535
Alignment:
Q  91 tttgagcaaaatatatttccactttctattatatttctttcatatatgcgt--tccatgtggattgatattttt 162  Q
    ||||||| |||||||||| ||||||||| ||||| |||||||| |||| ||  ||||||||||||| |||||||    
T  15788608 tttgagccaaatatattttcactttctactatatatctttcatttatgtgtgttccatgtggattgctattttt 15788535  T

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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 99 - 281
Target Start/End: Complemental strand, 27867618 - 27867429
Alignment:
Q  99 aaatatatttccactttctattatatttctttcatatatgcgt--tccatgtggattgatatttttcctc----tttaggttgttctctatagactatca 192  Q
    |||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||| |||||||||||    |||| || ||||||||  |||||||     
T  27867618 aaatatatttccactttctactatagttctttcatatatgtgtgttccatgtggattgctatttttcctcgaaatttatgtcgttctctacggactatcg 27867519  T
Q  193 gttatattatcatacacatgagacacttgttttgataccttgagcctttttcaagccactcagaattattattg-tatatcatttgtgaa 281  Q
    ||| |||||||||||||| ||||||||||||||| |||||  |||||||||||||| ||   || ||||||||| |||||| ||||||||    
T  27867518 gttttattatcatacacacgagacacttgttttggtacctcaagcctttttcaagctaccttgatttattattgttatatcctttgtgaa 27867429  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 9501493 - 9501607
Alignment:
Q  185 gactatcagttatattatcatacacatgagacacttg-ttttgataccttgagcctttttcaagccactcagaattattattgtatatcatttgtgaaac 283  Q
    ||||||||||| |||| ||||||||| |||||| ||| ||||| || || |||||||||||||||||| | ||||| | ||| |||||| | |||||||     
T  9501493 gactatcagttgtattgtcatacacacgagacatttgtttttggtaactagagcctttttcaagccaccctgaattgtcattatatatcttctgtgaaat 9501592  T
Q  284 tagtttgagcctcca 298  Q
     | ||||||||||||    
T  9501593 cactttgagcctcca 9501607  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 283
Target Start/End: Original strand, 14426582 - 14426681
Alignment:
Q  185 gactatcagttatattatcatacacatgagacacttg-ttttgataccttgagcctttttcaagccactcagaattattattgtatatcatttgtgaaac 283  Q
    |||||||||||||||| ||||||||||||| || ||| ||||| || || ||||||||||||| |||| | ||||||| ||| | |||| ||||||||||    
T  14426582 gactatcagttatattgtcatacacatgaggcatttgtttttggtaactagagcctttttcaatccaccctgaattatcattatttatcctttgtgaaac 14426681  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 5633654 - 5633609
Alignment:
Q  197 tattatcatacacatgagacacttg-ttttgataccttgagccttt 241  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||    
T  5633654 tattattatacacatgagacacttgattttgataccttgagccttt 5633609  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 12972967 - 12972920
Alignment:
Q  185 gactatcagttatattatcatacacatgagacacttgttttgatacct 232  Q
    |||||||||||||||||||||||||||||| ||||||| ||| |||||    
T  12972967 gactatcagttatattatcatacacatgaggcacttgtcttggtacct 12972920  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 18388613 - 18388682
Alignment:
Q  228 taccttgagcctttttcaagccactcagaattattattgtatatcatttgtgaaactagtttgagcctcca 298  Q
    ||||| |||||||||| |||||||  ||||| |||||||| |||| |||||||||| | ||||||||||||    
T  18388613 tacctagagcctttttgaagccacctagaat-attattgtttatcctttgtgaaaccactttgagcctcca 18388682  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 24840706 - 24840829
Alignment:
Q  176 ttctctatagactatcagttatattatcatacacatgagacacttg-ttttgataccttgagcctttttcaagccactcagaattattattgtatatcat 274  Q
    |||| ||||||||||||||| |||| ||||| ||||||| || ||| |||| ||| || |||||||||||||||||| |  || ||||||| |||||| |    
T  24840706 ttctttatagactatcagttgtattttcatatacatgaggcatttgttttttataactagagcctttttcaagccaccctaaaatattattatatatctt 24840805  T
Q  275 ttgtgaaactagtttgagcctcca 298  Q
     | |||||  | ||||||||||||    
T  24840806 ctatgaaatcactttgagcctcca 24840829  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 16604185 - 16604129
Alignment:
Q  185 gactatcagttatattatcatacacatgagacacttgttttgataccttgagccttt 241  Q
    |||||||| || ||||||||||| || |||||||||| |||| ||||||||||||||    
T  16604185 gactatcatttgtattatcatactcacgagacacttgatttggtaccttgagccttt 16604129  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 305
Target Start/End: Complemental strand, 16053487 - 16053356
Alignment:
Q  175 gttctctatagactatcagttatattatcatacacatgagacact--tgttttgataccttgagcctttttcaagccactcagaattattattgtatatc 272  Q
    |||||||||||||||||||||||||| ||||||||| ||| || |  | ||||| || || | ||| |||||||||||| | ||||||| ||   |||||    
T  16053487 gttctctatagactatcagttatattgtcatacacacgaggcatttattttttggtaactagggcc-ttttcaagccaccctgaattatcatcacatatc 16053389  T
Q  273 atttgtgaaactagtttgagcctccaagcaata 305  Q
     |||||||||| | ||| |||||||| ||||||    
T  16053388 ctttgtgaaaccacttttagcctccatgcaata 16053356  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 41510333 - 41510265
Alignment:
Q  179 tctatagactatcagttatattatcatacacatgagacacttgttttgataccttgagcctttttcaagc 248  Q
    |||| |||||||  ||||||| ||||||||||||||| ||| | |||| ||||||||||| |||||||||    
T  41510333 tctacagactattggttatataatcatacacatgagagactcg-tttggtaccttgagcccttttcaagc 41510265  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 7955267 - 7955323
Alignment:
Q  194 ttatattatcatacacatgagacacttgttttgataccttgagcctttttcaagccac 251  Q
    ||||||||||||||||||||  |||||| |||| |||||||| | |||||||||||||    
T  7955267 ttatattatcatacacatgatgcacttg-tttggtaccttgatcttttttcaagccac 7955323  T

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