View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9411_low_2 (Length: 579)

Name: NF9411_low_2
Description: NF9411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9411_low_2
NF9411_low_2
[»] chr2 (21 HSPs)
chr2 (292-563)||(10474887-10475151)
chr2 (292-563)||(10489110-10489383)
chr2 (297-450)||(10493190-10493340)
chr2 (292-396)||(7478278-7478382)
chr2 (295-427)||(7481846-7481979)
chr2 (330-450)||(10507777-10507897)
chr2 (476-563)||(10507928-10508015)
chr2 (484-563)||(10493377-10493456)
chr2 (208-288)||(10474775-10474856)
chr2 (483-555)||(10545590-10545662)
chr2 (367-438)||(10463766-10463836)
chr2 (485-563)||(10849930-10850008)
chr2 (484-568)||(7481705-7481789)
chr2 (484-563)||(7478124-7478203)
chr2 (472-563)||(10463864-10463955)
chr2 (363-402)||(10545470-10545509)
chr2 (245-288)||(7478413-7478457)
chr2 (372-436)||(10863288-10863352)
chr2 (484-568)||(27968461-27968545)
chr2 (484-568)||(28092042-28092126)
chr2 (484-568)||(28102274-28102358)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 292 - 563
Target Start/End: Original strand, 10474887 - 10475151
Alignment:
Q  292 gacacgtatgtgctatttttagttgagacacatttaggatgctcaaacttaaacatcctcaacactcgaaaacaatatgttgataaactatttgtcaaaa 391  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  10474887 gacatgtatgtgctatttttagttgagacacgtttaggatgctcaaacttcaacatcctcaacacttgaagacaatatgttgataaactatttatcaaaa 10474986  T
Q  392 caaaaacatatgagaaatctttggtcaatgtaaaaccaaataattagcatgcgaaactcagatgnnnnnnnnnnnnnnntacactgttagtcacacacct 491  Q
    |||||||||| || | |||| || | || |||||||||||||||||| |||| |||||  ||||                ||| |||   || |||||||    
T  10474987 caaaaacataggacacatctatgctaaacgtaaaaccaaataattagtatgcaaaactgcgatgaaaaaaagaaag----acattgt---tcccacacct 10475079  T
Q  492 caagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 563  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  10475080 caagatcagctgctgagatgggcttgtcaccactgaaagcttctgcaagtttatcgtccacctcggacacag 10475151  T

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Target: chr2; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 292 - 563
Target Start/End: Original strand, 10489110 - 10489383
Alignment:
Q  292 gacacgtatgtgctatttttagttgagacacatttaggatgctcaaacttaaacatcctcaacactcgaaaacaatatgttgataaactatttgtcaaaa 391  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  || |||||||||||||||||||||||||||||    
T  10489110 gacatgtatgtgctttttttagttgagacacatttaggatgctcaaacttcaacatcctcaacactttaagacaatatgttgataaactatttgtcaaaa 10489209  T
Q  392 caaaaacatatgagaaatctttggtcaatgtaaaaccaaataattagcatgcgaaactcagatg-nnnnnnnnnnnnnnntacactgttagtc-acacac 489  Q
    |||||||||||  |||||||| | | |||||||| ||||||||||||||||| |||||| ||||                 ||| ||||| || ||||||    
T  10489210 caaaaacatatttgaaatcttcgctaaatgtaaagccaaataattagcatgccaaactccgatgaaaaaagaaaagaaaagacattgttactcaacacac 10489309  T
Q  490 ctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 563  Q
    || ||||||||||||||| || |||||||| |||  ||||||||| ||||||||||| ||||||||||||||||    
T  10489310 ctgaagatcagctgctgatataggcttgtcaccattgaaagcttcagcaagtttatcgtccacctcggacacag 10489383  T

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Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 297 - 450
Target Start/End: Original strand, 10493190 - 10493340
Alignment:
Q  297 gtatgtgctatttttagttgagacacatttaggatgctcaaacttaaacatcctcaacactcgaaaacaatatgttgataaactatttgtcaaaacaaaa 396  Q
    ||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||   ||  || ||||||||||||||||||||||||||||||||||    
T  10493190 gtatgtgctttttttagttgagacacatttaggaagttcaaacttcaacatcctca---cttcaagacaatatgttgataaactatttgtcaaaacaaaa 10493286  T
Q  397 acatatgagaaatctttggtcaatgtaaaaccaaataattagcatgcgaaactc 450  Q
    |||| ||| ||||||||| | ||||||||||||||||||  |||||| ||||||    
T  10493287 acatctgataaatctttgctaaatgtaaaaccaaataatatgcatgcaaaactc 10493340  T

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Target: chr2; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 292 - 396
Target Start/End: Complemental strand, 7478382 - 7478278
Alignment:
Q  292 gacacgtatgtgctatttttagttgagacacatttaggatgctcaaacttaaacatcctcaacactcgaaaacaatatgttgataaactatttgtcaaaa 391  Q
    |||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  7478382 gacatgtatgtgctgtttttagttgacacacatttaggatgctcaaacttcaacatcctcaacacttgaagacaatatgttgataaactatttgtcaaaa 7478283  T
Q  392 caaaa 396  Q
    |||||    
T  7478282 caaaa 7478278  T

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Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 295 - 427
Target Start/End: Complemental strand, 7481979 - 7481846
Alignment:
Q  295 acgtatgtgctatttttagttgagacacatttaggatgctcaaacttaaacatcctcaacactcgaaaacaatatgttgataaactatttgtcaaaaca- 393  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||   || |||||||||||||||| ||||||||||||||     
T  7481979 acgtatgtgctttttttagttgagacacatttaggaagctcaaacttcaacatcctcaacacgtcaagacaatatgttgataaattatttgtcaaaacaa 7481880  T
Q  394 aaaacatatgagaaatctttggtcaatgtaaaac 427  Q
    ||||||| ||| ||||||||| | |||| |||||    
T  7481879 aaaacatctgataaatctttgctaaatgcaaaac 7481846  T

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Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 330 - 450
Target Start/End: Original strand, 10507777 - 10507897
Alignment:
Q  330 atgctcaaacttaaacatcctcaacactcgaaaacaatatgttgataaactatttgtcaaaacaaaaacatatgagaaatctttggtcaatgtaaaacca 429  Q
    |||||||||||| ||||||||| ||||   || |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |    
T  10507777 atgctcaaacttcaacatcctctacacctcaagacaatatgttgataaactatttgttaaaacaaaaacatatgagaaatctttgctaaatgtaaaacaa 10507876  T
Q  430 aataattagcatgcgaaactc 450  Q
    ||||||||| |||| ||||||    
T  10507877 aataattagtatgcaaaactc 10507897  T

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Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 476 - 563
Target Start/End: Original strand, 10507928 - 10508015
Alignment:
Q  476 tgttagtcacacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 563  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| || |||||||||||||    
T  10507928 tgttactcacacacctcaagatcagctgctgatatgggcttgtcaccaccgaaagcttcagcaagtttatcgtcaacctcggacacag 10508015  T

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Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 563
Target Start/End: Original strand, 10493377 - 10493456
Alignment:
Q  484 acacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 563  Q
    |||||||||||||||||||||||||||||| ||||| |  |  |||||||| ||||||||||| ||||||||||||||||    
T  10493377 acacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttatcgtccacctcggacacag 10493456  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 10474775 - 10474856
Alignment:
Q  208 aacaatgtgcggataaagttcataatattttataatgtttatattatg-ttcacatactatattgtggtatcttattcgaga 288  Q
    |||||| |||||||||| ||||| |||| ||| ||| ||||||||||| ||||||||||||||| || ||||||||||||||    
T  10474775 aacaatatgcggataaacttcattatatcttaaaatatttatattatgtttcacatactatattatgctatcttattcgaga 10474856  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 483 - 555
Target Start/End: Original strand, 10545590 - 10545662
Alignment:
Q  483 cacacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctc 555  Q
    ||||||||||||||||||||||||| |||||||||||||  |  |||||||| ||||||||||| || |||||    
T  10545590 cacacacctcaagatcagctgctgaaatgggcttgtcgctgcaaaaagcttcagcaagtttatcgtctacctc 10545662  T

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Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 438
Target Start/End: Original strand, 10463766 - 10463836
Alignment:
Q  367 tatgttgataaactatttgtcaaaacaaaaacatatgagaaatctttggtcaatgtaaaaccaaataattag 438  Q
    ||||||||||||||||| ||||||||||||||||  || ||| ||||| | |||||||||||||||||||||    
T  10463766 tatgttgataaactattagtcaaaacaaaaacatgaga-aaaactttgctaaatgtaaaaccaaataattag 10463836  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 485 - 563
Target Start/End: Original strand, 10849930 - 10850008
Alignment:
Q  485 cacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 563  Q
    |||||||||||||||| |||||| ||||||||||| |  |  |||||||| ||||||||||| |||||||| |||||||    
T  10849930 cacacctcaagatcaggtgctgatatgggcttgtcacagcgaaaagcttcagcaagtttatcgtccacctcagacacag 10850008  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 484 - 568
Target Start/End: Complemental strand, 7481789 - 7481705
Alignment:
Q  484 acacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacaggttct 568  Q
    |||||||||||||||||| ||||||||||||||||| |  |  |||||||| ||||||||||| ||  |||||| ||||| ||||    
T  7481789 acacacctcaagatcagcggctgagatgggcttgtcactgctaaaagcttcagcaagtttatcgtcagcctcgggcacagtttct 7481705  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 563
Target Start/End: Complemental strand, 7478203 - 7478124
Alignment:
Q  484 acacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 563  Q
    ||||||||||||||||||| ||||| ||| |||||| |  |  |||||||| ||||||||||  ||||||||||||||||    
T  7478203 acacacctcaagatcagctactgagttggacttgtcactgcaaaaagcttcagcaagtttattgtccacctcggacacag 7478124  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 563
Target Start/End: Original strand, 10463864 - 10463955
Alignment:
Q  472 acactgttagtcacacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 563  Q
    |||||||||  ||||||||| ||||||||||||||| ||||||||| | |  |  ||||| || ||||||||||||||||| || |||||||    
T  10463864 acactgttacccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 10463955  T

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Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 10545470 - 10545509
Alignment:
Q  363 acaatatgttgataaactatttgtcaaaacaaaaacatat 402  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  10545470 acaatatgttgataaactatttgtcaaaacaaaatcatat 10545509  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 7478457 - 7478413
Alignment:
Q  245 tttatattatgtt-cacatactatattgtggtatcttattcgaga 288  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||    
T  7478457 tttatattatgtttcacatactatattatggtatcttattcgaga 7478413  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 436
Target Start/End: Original strand, 10863288 - 10863352
Alignment:
Q  372 tgataaactatttgtcaaaacaaaaacatatgagaaatctttggtcaatgtaaaaccaaataatt 436  Q
    ||||||||||||||||||||  | ||||||||| ||||||| | | ||| |||||||||||||||    
T  10863288 tgataaactatttgtcaaaagtagaacatatgacaaatcttcgctaaatataaaaccaaataatt 10863352  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 568
Target Start/End: Original strand, 27968461 - 27968545
Alignment:
Q  484 acacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacaggttct 568  Q
    ||||||||||||||||| |||||| |||||||| ||||  |  |||||||| |||||||| || |||||||  ||||||| ||||    
T  27968461 acacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 27968545  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 568
Target Start/End: Complemental strand, 28092126 - 28092042
Alignment:
Q  484 acacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacaggttct 568  Q
    ||||||||||||||||| |||||| |||||||| ||||  |  |||||||| |||||||| || |||||||  ||||||| ||||    
T  28092126 acacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28092042  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 568
Target Start/End: Complemental strand, 28102358 - 28102274
Alignment:
Q  484 acacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacaggttct 568  Q
    ||||||||||||||||| |||||| |||||||| || |  |  |||||||| |||||||| || |||||||  ||||||| ||||    
T  28102358 acacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28102274  T

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