View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9411_low_25 (Length: 242)
Name: NF9411_low_25
Description: NF9411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9411_low_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 40666717 - 40666940
Alignment:
| Q |
19 |
ataccagacattagcatgtcccgagtcttttgctggcaccaactttcgtgcaatggaggaagaagtcagnnnnnnngtgcatgtatatgcaaatgagctt |
118 |
Q |
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| T |
40666717 |
ataccagacattagcatgtcccgagtcttttgctggcaccaactttcgtgcaatggaggaagaagtcagaaaaaaagtgcatgtatatgcaaatgagctt |
40666816 |
T |
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| Q |
119 |
ttatcatgtcttgaagattttgaaatccaaggggtatattttaggttctcaaacctttgtaataatgtgtgagtattatttttaaccttgaagttgaaac |
218 |
Q |
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| T |
40666817 |
ttatcatgtcttgaagattttgaaatccaaggggtatattttaggttctcaaacctttgtaataatgtgtgagtattatttttaaccttgaagttgaaac |
40666916 |
T |
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| Q |
219 |
taatataatagctatactatgttc |
242 |
Q |
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| T |
40666917 |
taatataatagctatactatgttc |
40666940 |
T |
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