View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9411_low_26 (Length: 237)
Name: NF9411_low_26
Description: NF9411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9411_low_26 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: scaffold0059 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 21404 - 21605
Alignment:
| Q |
20 |
atacactattcaaacacactcacctgtcaccatgtgatgtcgaatattcattggtcacaagatgaatatcctgtcaagatattattcgaccaatatttaa |
119 |
Q |
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| T |
21404 |
atacactattcaaacacactcaccagtcaccatgtgatgtcgaatattcattggtcacaagatgaatatcccgtcaagatattatt------------aa |
21491 |
T |
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| Q |
120 |
taaatcaatagaagacaaacacttgaaaataaaatttctaacagcctacgctagctcagataatgattccttgtagtgaatcccagaatcaccatagtga |
219 |
Q |
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| T |
21492 |
taaatcaatagaagagaaacacttgaaaataaaatttctaacagcctacactagctcagataatgattccttgtagtgaat-gcagaatcaccatagtga |
21590 |
T |
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| Q |
220 |
atcggaatttagtat |
234 |
Q |
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| T |
21591 |
atcggaatttagtat |
21605 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 14077524 - 14077455
Alignment:
| Q |
93 |
tcaagatattattcgaccaatatttaataaatcaatagaagacaaacacttgaaaataaaatttctaaca |
162 |
Q |
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| T |
14077524 |
tcaagatattattcaactaatgtttaataaatcattagaagaccaacatttaaaaataaaatttcgaaca |
14077455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 29026511 - 29026447
Alignment:
| Q |
95 |
aagatattattcgaccaatatttaataaatcaatagaagacaaacacttgaaaataaaatttcta |
159 |
Q |
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| T |
29026511 |
aagatattattcaaccaatgtttaataaatcattagaagaccaacacctagaaataaaatttcta |
29026447 |
T |
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