View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9411_low_4 (Length: 524)
Name: NF9411_low_4
Description: NF9411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9411_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 511
Target Start/End: Complemental strand, 53805704 - 53805211
Alignment:
| Q |
18 |
aaccagaaccggaggatacagaagaaaattctcaattatgcactcacagttatagacgttatgattatctccaccacgacaccgttttatcctcagttcc |
117 |
Q |
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| T |
53805704 |
aaccagaaccggaggatacagaagaaaattctcaattatgcactcacagttatagacgttatgattatctccaccacgacaccgttttatcctcagttcc |
53805605 |
T |
|
| Q |
118 |
tgataatgtgactttcatgacctacgtcaaacctatctacgattcctattctcctccgcctccgttgaataccaccgaaaacttttccggtttaaatccg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
53805604 |
tgataatgtgactttcatgacctacgtcaaacctatctacgattcctattctcctccgcctccgtcgaataccaccggaaacttttccggtttaaatccg |
53805505 |
T |
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| Q |
218 |
ccgtcaccgcctcctccgagcaactctgcttgggaatttttggacttctttgaaccgtacgagaaattcaaagtacgttacagtcacggtggggacggtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53805504 |
ccgtcaccgcctcctccgagcaactctgcttgggaatttttggacttctttgaaccgtacgagaaattcaaagtacgttacagtcacggtggggacggtt |
53805405 |
T |
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| Q |
318 |
acactgacaccaacataacggatnnnnnnnnnnnnnnnnnnnnnnnngttaacggtcacgtgactcagaaaagtgagtgtgttaaatctaacggagttaa |
417 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53805404 |
acactgacaccagcataacggatgaaaaagaaaaggaaaaggaaaaggttaacggtcacgtgactcagaaaagtgagtgtgttaaatctaacggagttaa |
53805305 |
T |
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| Q |
418 |
cgtgagtgagacagaaaacggagaagggaaaaataaggaagctaatttaaaagaagagagttcaattttggagaaaaagttaccggagttagaa |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53805304 |
cgtgagtgagacagaaaacggagaagggaaaaataaggaagctaatttgaaagaagagagttcaattttggagaaaaagttaccggagttagaa |
53805211 |
T |
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