View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9411_low_9 (Length: 465)
Name: NF9411_low_9
Description: NF9411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9411_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 49217017 - 49217213
Alignment:
| Q |
1 |
cattgtccatccctaataatgttgtatcataagatatataagtatcaaatatcaagtgtgtgagtacccgtatttgatgatgtgaaaactaactatctat |
100 |
Q |
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| T |
49217017 |
cattgtccatccctaataatgttgtatcataagatatataagtatcaaatatcaagtg-gtgagtacccgtatttgatgatgtgaaaactaactatctat |
49217115 |
T |
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| Q |
101 |
gcatgtaacaannnnnnnnaggggatctatgcttgcaacatgtttagt-nnnnnnntaaaataat--gtattgttgcagttgtggctgtgaaaatcaag |
196 |
Q |
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| T |
49217116 |
gcatgtaacaa-tttttttaggggatctatgcttgcaacatgtttagtaaaaaaaataaaataattgttattgttgcagttgtggctgtgaaaatcaag |
49217213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 49217214 - 49217255
Alignment:
| Q |
242 |
cgaaaatatctaattacaataattgtccataattctttctgc |
283 |
Q |
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| T |
49217214 |
cgaaaatatctaattacaataattgtccataattctttctgc |
49217255 |
T |
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