View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9412_low_1 (Length: 563)

Name: NF9412_low_1
Description: NF9412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9412_low_1
NF9412_low_1
[»] chr3 (7 HSPs)
chr3 (8-183)||(26883526-26883701)
chr3 (267-393)||(26883785-26883911)
chr3 (47-183)||(8364554-8364687)
chr3 (489-550)||(26883995-26884056)
chr3 (50-149)||(14800868-14800966)
chr3 (74-149)||(15485871-15485946)
chr3 (72-121)||(21515864-21515913)
[»] chr8 (7 HSPs)
chr8 (47-183)||(28914665-28914801)
chr8 (47-183)||(8989354-8989491)
chr8 (72-152)||(17938077-17938157)
chr8 (79-146)||(22741738-22741805)
chr8 (72-149)||(24175555-24175632)
chr8 (115-164)||(24374729-24374779)
chr8 (72-163)||(17729660-17729752)
[»] chr2 (7 HSPs)
chr2 (47-183)||(27488501-27488638)
chr2 (47-149)||(18371561-18371662)
chr2 (47-149)||(18830679-18830781)
chr2 (47-183)||(27180395-27180530)
chr2 (47-183)||(27829937-27830072)
chr2 (79-162)||(17980506-17980589)
chr2 (76-149)||(21872371-21872441)
[»] chr6 (8 HSPs)
chr6 (47-183)||(26272952-26273090)
chr6 (79-149)||(14881633-14881703)
chr6 (47-162)||(22886092-22886208)
chr6 (81-162)||(17008064-17008146)
chr6 (79-149)||(22728100-22728170)
chr6 (47-162)||(22904048-22904164)
chr6 (103-162)||(25931014-25931074)
chr6 (109-162)||(24454467-24454521)
[»] chr1 (9 HSPs)
chr1 (93-182)||(17774376-17774466)
chr1 (79-162)||(18576917-18577001)
chr1 (79-149)||(25380358-25380428)
chr1 (82-162)||(17317252-17317333)
chr1 (79-183)||(30985197-30985302)
chr1 (79-162)||(23510643-23510726)
chr1 (47-163)||(14458688-14458804)
chr1 (103-162)||(17199723-17199783)
chr1 (79-162)||(13332752-13332837)
[»] chr7 (11 HSPs)
chr7 (79-162)||(23008904-23008988)
chr7 (72-162)||(11968824-11968915)
chr7 (72-162)||(11976819-11976910)
chr7 (47-183)||(21935758-21935893)
chr7 (47-183)||(28489918-28490055)
chr7 (47-149)||(9634245-9634346)
chr7 (47-149)||(7229747-7229847)
chr7 (79-164)||(12153491-12153577)
chr7 (82-163)||(30253024-30253106)
chr7 (78-162)||(12356275-12356360)
chr7 (79-162)||(9652907-9652991)
[»] chr4 (4 HSPs)
chr4 (51-123)||(3462730-3462801)
chr4 (47-149)||(13602900-13603001)
chr4 (47-149)||(12070744-12070847)
chr4 (79-162)||(13523932-13524016)
[»] scaffold0111 (1 HSPs)
scaffold0111 (79-149)||(26070-26140)
[»] chr5 (5 HSPs)
chr5 (75-127)||(23190089-23190141)
chr5 (103-148)||(23274072-23274117)
chr5 (79-162)||(20057105-20057189)
chr5 (111-181)||(20972368-20972440)
chr5 (79-162)||(29831123-29831207)
[»] scaffold0054 (1 HSPs)
scaffold0054 (47-162)||(9608-9724)
[»] scaffold0004 (1 HSPs)
scaffold0004 (47-116)||(225709-225777)
[»] scaffold0561 (1 HSPs)
scaffold0561 (79-127)||(721-769)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 9e-90; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 26883526 - 26883701
Alignment:
Q  8 agtttggtggtgttgtgattgcttagggtttaagattagaatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26883526 agtttggtggtgttgtgattgcttagggtttaagattagaatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttc 26883625  T
Q  108 tatcaagaagagtagacgtactccgaagcgaggacgaaagggaaactactataaaattctggtgttcttctcttcc 183  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26883626 tatcaagaagagtagacgtaccccgaagcgaggacgaaagggaaactactataaaattttggtgttcttctcttcc 26883701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 267 - 393
Target Start/End: Original strand, 26883785 - 26883911
Alignment:
Q  267 ggcttaacctaatcttgattcattgaaataaagacgatcctaactcatattcaataaataatgatatgttagtgnnnnnnnnnntactatattgatattt 366  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||    
T  26883785 ggcttaacctaatcttgattcattaaaataaagacgatcctaactcatattcaataaataatgatatgttagtgaaaaaaaaaatactatattgatattt 26883884  T
Q  367 taaagccacacttattttaagatagtg 393  Q
    |||||||||||||||||||||||||||    
T  26883885 taaagccacacttattttaagatagtg 26883911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 8364554 - 8364687
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||||||| ||| ||||||||||| |||||||||||||||||||| ||||||  |||||| ||||   ||||||| ||||||||| ||  ||||||||||    
T  8364554 aatcataaaaatttgtaaacaattttcaacaatagtggaagtccttgatagaggcgttttttatc---aagagtaaacgtactccaaaatgaggacgaaa 8364650  T
Q  147 ggg-aaactactataaaattctggtgttcttctcttcc 183  Q
    ||| |||||||||||||||| |||||||||||||||||    
T  8364651 gggaaaactactataaaatt-tggtgttcttctcttcc 8364687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 489 - 550
Target Start/End: Original strand, 26883995 - 26884056
Alignment:
Q  489 attaggatcatatgaactcctagatttggacccattttcaactaagggaaaaaggccaaaat 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26883995 attaggatcatatgaactcctagatttggacccattttcaactaagggaaaaaggccaaaat 26884056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 14800868 - 14800966
Alignment:
Q  50 cataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg 149  Q
    ||||||||| |||||| | || |||||| |||||||||| || |||||| |||||||| |||||||||||| || ||||  |||||||||||||||||||    
T  14800868 cataacaatttgtaaatatttttcaaca-tagtggaagttcttgatagagacgttttcaatcaagaagagtggaggtacctcgaagcgaggacgaaaggg 14800966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 15485946 - 15485871
Alignment:
Q  74 aacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg 149  Q
    |||||| || |||||||| |||||| ||||| |||||||||||||||| |  ||| |||||| |||||||||||||    
T  15485946 aacaattgttgaagtccttgatagagacgttctctatcaagaagagtatatataccccgaagtgaggacgaaaggg 15485871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 21515913 - 21515864
Alignment:
Q  72 tcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagta 121  Q
    |||||||||||||||||||| |||||| | || || ||||||||||||||    
T  21515913 tcaacaatagtggaagtccttgatagagatgtattatatcaagaagagta 21515864  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 47 - 183
Target Start/End: Complemental strand, 28914801 - 28914665
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacg-aa 145  Q
    |||||||||||| |||||||| || |||||||||||||||||||| |||| |  ||||||||||||||||  || || |||| ||||||| |||||| ||    
T  28914801 aatcataacaatttgtaaacatttttcaacaatagtggaagtccttgataaaggcgttttctatcaagaatggtggaggtaccccgaagcaaggacgaaa 28914702  T
Q  146 agggaaactactataaaattctggtgttcttctcttcc 183  Q
    |||| ||| | ||| |||||||||||||||||||||||    
T  28914701 aggggaaccattat-aaattctggtgttcttctcttcc 28914665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 8989354 - 8989491
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgta-ctccgaagcgaggacgaa 145  Q
    |||||||||||| |||||| | || |||| ||||||||||||||| |||||| | ||||||||||||||||||| || ||| | |||||||||||| |||    
T  8989354 aatcataacaatttgtaaatatttttcaataatagtggaagtccttgatagagaagttttctatcaagaagagtggaggtatccccgaagcgaggatgaa 8989453  T
Q  146 aggga-aactactataaaattctggtgttcttctcttcc 183  Q
    || || ||| ||||| |||| | |||| |||||||||||    
T  8989454 agagagaaccactat-aaatcccggtggtcttctcttcc 8989491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 17938077 - 17938157
Alignment:
Q  72 tcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaagggaaa 152  Q
    ||||||||||||||  |||| |||||| || | |||||||||||| |||| |||||| | |||||||||||||||||||||    
T  17938077 tcaacaatagtggatatccttgatagagacatattctatcaagaaaagtaaacgtaccctgaagcgaggacgaaagggaaa 17938157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 22741738 - 22741805
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||||||||| || |||||  ||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  22741738 tagtggaagttcttgatagcgacgttttctatcaagaagagtagacatactccaaagtgaggacgaaa 22741805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 24175632 - 24175555
Alignment:
Q  72 tcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg 149  Q
    |||||||||||||||||| | |||||| | ||||||||||||||||| |||| |||| ||||||| | || |||||||    
T  24175632 tcaacaatagtggaagtctttgatagagatgttttctatcaagaagaatagatgtaccccgaagcaaagatgaaaggg 24175555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 24374779 - 24374729
Alignment:
Q  115 aagagtagacgtactccgaagcgaggacgaaaggga-aactactataaaat 164  Q
    |||||||||||||| |||||| |||||||||||||| ||||||||||||||    
T  24374779 aagagtagacgtaccccgaagggaggacgaaagggagaactactataaaat 24374729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 17729752 - 17729660
Alignment:
Q  72 tcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa-gggaaactactataaaa 163  Q
    |||||||||||| || |||| |||||| || | || ||||||||||||||||  | |  |||||||||||||||| ||| |||||||||||||    
T  17729752 tcaacaatagtgaaaatccttgatagagacatattttatcaagaagagtagattttcctcgaagcgaggacgaaatggggaactactataaaa 17729660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 27488501 - 27488638
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||||||| ||| ||||| ||| | |||||||||||||||||||| |||||| |||| |||||||| |||||||| |||||| |||||||||| ||||||    
T  27488501 aatcataaaaat-tgtaatcaaatttcaacaatagtggaagtccttgatagagacgtattctatcaggaagagtaaacgtaccccgaagcgagaacgaaa 27488599  T
Q  147 ggga-aactactat-aaaattctggtgttcttctcttcc 183  Q
     ||| ||| ||| | |||||| |||||||||||||||||    
T  27488600 tggagaacaactgtaaaaattatggtgttcttctcttcc 27488638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 18371561 - 18371662
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||||||||||| |||||||| || |||||| ||||||||||||| |||||| || ||||||| |||||||| | || |||| |||||||||||||||||    
T  18371561 aatcataacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacattttctaacaagaagaatggaggtaccccgaagcgaggacgaaa 18371659  T
Q  147 ggg 149  Q
    |||    
T  18371660 ggg 18371662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 18830781 - 18830679
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||||||||| | |||||||| || |||| ||||||||||||||| |||||  ||| ||||||||||||||||| || |||| || || ||||||| |||    
T  18830781 aatcataacagtttgtaaacatttttcaagaatagtggaagtccttgataggaacgatttctatcaagaagagtggaggtaccccaaaacgaggacaaaa 18830682  T
Q  147 ggg 149  Q
    |||    
T  18830681 ggg 18830679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 27180395 - 27180530
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||||||||||| |||||| | || |||||||||||||||||||| ||||||   ||||||||||  ||||||| || |||| |||||  ||||||||||    
T  27180395 aatcataacaatttgtaaatatttttcaacaatagtggaagtccttgatagaggagttttctatcgtgaagagtggaggtac-ccgaaatgaggacgaaa 27180493  T
Q  147 -gggaaactactataaaattctggtgttcttctcttcc 183  Q
     ||| ||| ||||| |||||| ||||| ||||||||||    
T  27180494 tggggaaccactat-aaattccggtgtacttctcttcc 27180530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 27829937 - 27830072
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||||||||||| |||||| | || |||||||||||||||||||| ||||||   ||||||||||  ||||||| || |||| |||||  ||||||||||    
T  27829937 aatcataacaatttgtaaatatttttcaacaatagtggaagtccttgatagaggagttttctatcgtgaagagtggaggtac-ccgaaatgaggacgaaa 27830035  T
Q  147 -gggaaactactataaaattctggtgttcttctcttcc 183  Q
     ||| ||| ||||| |||||| ||||| ||||||||||    
T  27830036 tggggaaccactat-aaattccggtgtacttctcttcc 27830072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 17980506 - 17980589
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaagggaaactactataaa 162  Q
    ||||||||||||| | | || | |||||| ||||||||||||||  |||| |||||| ||||||||||||| ||||||||||||    
T  17980506 tagtggaagtccttggtggagaggttttccatcaagaagagtaggtgtaccccgaagtgaggacgaaaggggaactactataaa 17980589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 21872371 - 21872441
Alignment:
Q  76 caatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg 149  Q
    |||||||||||||||| |||||| || |||||||||   |||||| ||||||| ||||||||||||||||||||    
T  21872371 caatagtggaagtccttgatagagacattttctatc---aagagtggacgtaccccgaagcgaggacgaaaggg 21872441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 47 - 183
Target Start/End: Complemental strand, 26273090 - 26272952
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||||||||||| ||||| ||| | |||||||||||||||| ||| |||| | || | ||||||||||||||| || ||||| | |||||||||||||||    
T  26273090 aatcataacaat-tgtaatcaaatttcaacaatagtggaagcccttgatatagacatattctatcaagaagagcagtcgtaccctgaagcgaggacgaaa 26272992  T
Q  147 gggaaa--ctactat-aaaattctggtgttcttctcttcc 183  Q
    | ||||  ||||||| |||||| |||||||||||||||||    
T  26272991 gagaaaatctactataaaaattatggtgttcttctcttcc 26272952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 14881633 - 14881703
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg 149  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| | |||| |||||||    
T  14881633 tagtgaaagtccttgatagatacattttctatcaagaagagtagacgtactccgaaacaaggatgaaaggg 14881703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 22886092 - 22886208
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||||||||||| | ||||||||| |||||||||||  |||| |  ||||   |||||||||||||||||||||| || ||   ||||||||||||||||    
T  22886092 aatcataacaatttctaaacaattttcaacaatagtaaaagttcatgataacgacgttttctatcaagaagagtaaacatatctcgaagcgaggacgaaa 22886191  T
Q  147 -gggaaactactataaa 162  Q
     ||| ||||||||||||    
T  22886192 ggggcaactactataaa 22886208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 17008064 - 17008146
Alignment:
Q  81 gtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa-gggaaactactataaa 162  Q
    ||||||||||| |||||| || | ||||||||| |||||||||||||| || |||||| || |||| |||||||||| |||||    
T  17008064 gtggaagtccttgatagagacatattctatcaaaaagagtagacgtaccccaaagcgatgatgaaaggggaaactacaataaa 17008146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 22728170 - 22728100
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg 149  Q
    ||||| ||||| | |||||| || ||||||||||||||||||||| |||| ||||||||| || |||||||    
T  22728170 tagtgaaagtctttgatagagaccttttctatcaagaagagtagatgtaccccgaagcgaagaggaaaggg 22728100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 22904048 - 22904164
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||| ||||||| | ||||||||| |||||||||||  |||| |  ||||   ||||||||||||||||| |||| || ||   ||||||||||||||||    
T  22904048 aatcctaacaatttctaaacaattttcaacaatagtaaaagttcatgataacgacgttttctatcaagaaaagtaaacatatctcgaagcgaggacgaaa 22904147  T
Q  147 -gggaaactactataaa 162  Q
     ||| ||||||||||||    
T  22904148 ggggcaactactataaa 22904164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 25931014 - 25931074
Alignment:
Q  103 ttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg-aaactactataaa 162  Q
    ||||| |||||||||||||||||||  ||||||| ||||||||||||  ||||||||||||    
T  25931014 ttttccatcaagaagagtagacgtaggccgaagcaaggacgaaagggcgaactactataaa 25931074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 24454521 - 24454467
Alignment:
Q  109 atcaagaagagtagacgtactccgaagcgaggacgaaaggg-aaactactataaa 162  Q
    |||||||||||||||||||  ||||||||| ||||||||||  ||||||||||||    
T  24454521 atcaagaagagtagacgtagcccgaagcgaagacgaaagggtgaactactataaa 24454467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 93 - 182
Target Start/End: Original strand, 17774376 - 17774466
Alignment:
Q  93 gatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaag-ggaaactactataaaattctggtgttcttctcttc 182  Q
    |||||| |||| |||||||| ||||||||||||| | |||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||    
T  17774376 gatagagacgtattctatcacgaagagtagacgtgccccgaagcgaggacgaaagaggaaactattataaaattatggtgttgttctcttc 17774466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 18577001 - 18576917
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa-gggaaactactataaa 162  Q
    |||||||||||||   |||| |||||||||| |||||||||||||||||| ||||  ||||||||||| ||| ||||||||||||    
T  18577001 tagtggaagtcctttgtagagacgttttctaccaagaagagtagacgtaccccgatacgaggacgaaagggggaactactataaa 18576917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 25380358 - 25380428
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg 149  Q
    ||||||||||||||||| || | |||||| | ||||||||||||| |||  ||||||||||||||||||||    
T  25380358 tagtggaagtcctcgatggagatgttttccaccaagaagagtagatgtagcccgaagcgaggacgaaaggg 25380428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 17317333 - 17317252
Alignment:
Q  82 tggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg-aaactactataaa 162  Q
    |||||||||| | | || |||||||| |||||||||||| ||||||  ||||||||||||||||||||  ||||||||||||    
T  17317333 tggaagtccttggtggagacgttttccatcaagaagagttgacgtagcccgaagcgaggacgaaagggcgaactactataaa 17317252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 30985302 - 30985197
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaagg-gaaactactataaaattctggtgttcttc 177  Q
    |||||||| |||| |||||| |||||| ||||||||||| ||||  |||| |  |||||| ||||||||| | |||||||||||||||   |||||||||    
T  30985302 tagtggaattccttgatagagacgtttactatcaagaagtgtagttgtaccctaaagcgaagacgaaaggaggaactactataaaatttcagtgttcttc 30985203  T
Q  178 tcttcc 183  Q
    ||||||    
T  30985202 tcttcc 30985197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 23510726 - 23510643
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaagggaaactactataaa 162  Q
    ||||||||||||| | | || |||||||| |||||||| |||| |||||| |||||||||| || || ||| ||||||||||||    
T  23510726 tagtggaagtccttggtggagacgttttccatcaagaaaagtaaacgtaccccgaagcgagaacaaagggggaactactataaa 23510643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 14458804 - 14458688
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacg-aa 145  Q
    |||||||||||| ||||| ||| | ||||||||||||||| |||| |||||| || | ||||||||||||  ||| |||||| | ||||| | || | ||    
T  14458804 aatcataacaat-tgtaatcaaatttcaacaatagtggaaatccttgatagagacatattctatcaagaaaggtatacgtaccctgaagctatgatgaaa 14458706  T
Q  146 agggaaactactataaaa 163  Q
    ||| ||||||||||||||    
T  14458705 aggaaaactactataaaa 14458688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 17199783 - 17199723
Alignment:
Q  103 ttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg-aaactactataaa 162  Q
    ||||| ||||||||||||||| |||  ||||||||||||||||||||  ||||||||||||    
T  17199783 ttttccatcaagaagagtagatgtagcccgaagcgaggacgaaagggtgaactactataaa 17199723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 13332837 - 13332752
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttct-atcaagaagagtagacgtactccgaagcgaggacgaaaggg-aaactactataaa 162  Q
    |||||||||||||   |||| ||||||| | | ||||||||| |||||||| ||||||| |||| ||||||| |||||||||||||    
T  13332837 tagtggaagtccttagtagagacgtttttttaacaagaagaggagacgtaccccgaagcaaggatgaaaggggaaactactataaa 13332752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 23008904 - 23008988
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa-gggaaactactataaa 162  Q
    ||||||||||||| | |||| |||||||||||||||||||||| |||||| |||| ||||||| |||| ||||||||||||||||    
T  23008904 tagtggaagtccttggtagagacgttttctatcaagaagagtaaacgtaccccgaggcgaggatgaaaggggaaactactataaa 23008988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 11968824 - 11968915
Alignment:
Q  72 tcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacg-aaagggaaactactataaa 162  Q
    ||||||||||||||||| || |||||| |||||||||| ||||||||||||||||||  ||||||||||| | ||| || ||||||||||||    
T  11968824 tcaacaatagtggaagttcttgatagagacgttttctaccaagaagagtagacgtacctcgaagcgaggatgaaaaagggaactactataaa 11968915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 11976819 - 11976910
Alignment:
Q  72 tcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacg-aaagggaaactactataaa 162  Q
    ||||||||||||||||| || |||| | | |||||||||||||||||||||||||||  ||||||||||||| ||| | |||||||||||||    
T  11976819 tcaacaatagtggaagttcttgataaagatgttttctatcaagaagagtagacgtacctcgaagcgaggacgaaaaagaaaactactataaa 11976910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 183
Target Start/End: Complemental strand, 21935893 - 21935758
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||||||| ||| |||||||| || |||||||||||| ||||||| |||| | | |||||||||||||||||||| | |||| | ||| | | |||||||    
T  21935893 aatcataaaaatttgtaaacatttttcaacaatagtgtaagtccttgataaagatgttttctatcaagaagagtaaaggtaccctgaaacaatgacgaaa 21935794  T
Q  147 gggaaactactataaaattctggtgttcttctcttcc 183  Q
    ||| ||| | ||| |||||| | ||||||||||||||    
T  21935793 ggggaaccattat-aaattccgatgttcttctcttcc 21935758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 28489918 - 28490055
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||||||||||| ||||||||||| ||||||||| | |||||||| |||||| | || ||||||||||||  ||||||||||   ||| |||| | ||||    
T  28489918 aatcataacaatttgtaaacaattctcaacaataat-gaagtccttgatagagatgtattctatcaagaaatgtagacgtaccttgaaacgagtatgaaa 28490016  T
Q  147 g-ggaaactactataaa-attctggtgttcttctcttcc 183  Q
    | || ||||||||||||  || |||||||||||||||||    
T  28490017 gagggaactactataaattttttggtgttcttctcttcc 28490055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 9634245 - 9634346
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||| ||||||| |||||||| || |||||| ||||||||||||| |||| | | ||||||||||||||||||| || |||  | ||||||||| |||||    
T  9634245 aatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgataaagatgttttctatcaagaagagtggaggtatcctgaagcgagggcgaaa 9634343  T
Q  147 ggg 149  Q
    |||    
T  9634344 ggg 9634346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 7229847 - 7229747
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||||||||||| |||||||| || |||||| ||||||||||||| |||||| |  | |||||||||||||||  || |||| |||||||||| || |||    
T  7229847 aatcataacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagagatattctatcaagaagagggga-gtaccccgaagcgagaacaaaa 7229750  T
Q  147 ggg 149  Q
    |||    
T  7229749 ggg 7229747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 12153577 - 12153491
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg-aaactactataaaat 164  Q
    |||||||| |||| | | || |||||||| |||||| ||||||||||||  |||||||||||| |||||||  ||||||||||||||    
T  12153577 tagtggaattccttggtggagacgttttccatcaaggagagtagacgtagcccgaagcgaggaagaaagggtgaactactataaaat 12153491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 30253106 - 30253024
Alignment:
Q  82 tggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg-aaactactataaaa 163  Q
    |||||||||| | | ||||||||||  | ||||||||||||| |||  ||||||||| ||||||||||  |||||||||||||    
T  30253106 tggaagtccttggtggatacgtttttcaccaagaagagtagatgtaacccgaagcgatgacgaaagggcgaactactataaaa 30253024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 12356275 - 12356360
Alignment:
Q  78 atagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaag-ggaaactactataaa 162  Q
    |||||||||||||| | | || |||||||  ||||||||||||| |||||  | ||||||| |||||||| | |||||||||||||    
T  12356275 atagtggaagtccttggtggagacgtttttcatcaagaagagtaaacgtagcctgaagcgacgacgaaagagcaaactactataaa 12356360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 9652991 - 9652907
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg-aaactactataaa 162  Q
    ||||||||||||| | | ||  ||||||| |||||||||||||||||||  || |||| | ||||||||||  ||||||||||||    
T  9652991 tagtggaagtccttggtggaggcgttttccatcaagaagagtagacgtagcccaaagcaatgacgaaagggtgaactactataaa 9652907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 3462801 - 3462730
Alignment:
Q  51 ataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtaga 123  Q
    |||||||| |||||||| || |||||| ||||||||||||| |||||| || |||||||||||||||||||||    
T  3462801 ataacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacattttctatcaagaagagtaga 3462730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 13603001 - 13602900
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||| ||||||| |||||||| || |||||| ||||||||||||| |||| | | ||||||||||||||||||| || |||  | ||||||||| |||||    
T  13603001 aatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgataaagatgttttctatcaagaagagtggaggtatcctgaagcgagggcgaaa 13602903  T
Q  147 ggg 149  Q
    |||    
T  13602902 ggg 13602900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 12070744 - 12070847
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagt-agacgtactccgaagcgaggacgaa 145  Q
    |||||||| ||| |||  ||| || |||||||||| |||| |||| |||| | ||||||||||||||||||| |  || ||||  |||||||||||||||    
T  12070744 aatcataataatttgttcacatttttcaacaatagcggaaatccttgataaaaacgttttctatcaagaagactgggaggtacctcgaagcgaggacgaa 12070843  T
Q  146 aggg 149  Q
    ||||    
T  12070844 aggg 12070847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 13524016 - 13523932
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg-aaactactataaa 162  Q
    ||||||||||||| | | ||  ||||||| |||||||||||||||||||  || |||| | ||||||||||  ||||||||||||    
T  13524016 tagtggaagtccttggtggaggcgttttccatcaagaagagtagacgtagcccaaagcaatgacgaaagggtgaactactataaa 13523932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 26140 - 26070
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg 149  Q
    ||||||||||||| | | || || ||||| |||||||||||||||||||  ||||||||||||||||||||    
T  26140 tagtggaagtccttggtggagacattttccatcaagaagagtagacgtagcccgaagcgaggacgaaaggg 26070  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 23190141 - 23190089
Alignment:
Q  75 acaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgta 127  Q
    |||||||||||||| ||  ||||| ||||||||||||||||||||||||||||    
T  23190141 acaatagtggaagttcttaatagagacgttttctatcaagaagagtagacgta 23190089  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 23274117 - 23274072
Alignment:
Q  103 ttttctatcaagaagagtagacgtactccgaagcgaggacgaaagg 148  Q
    ||||| |||||||||||||||||||  |||||||||||||||||||    
T  23274117 ttttccatcaagaagagtagacgtagcccgaagcgaggacgaaagg 23274072  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 20057189 - 20057105
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggga-aactactataaa 162  Q
    ||||||||||||  |||||| ||||| ||||||||||||||| || |||  | ||||| |||| |||||||| ||| ||||||||    
T  20057189 tagtggaagtccatgatagagacgttctctatcaagaagagtggaggtatcctgaagcaaggatgaaagggagaaccactataaa 20057105  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 20972368 - 20972440
Alignment:
Q  111 caagaagagtagacgtactccgaagcgaggacgaaaggg-aaactactataaaattct-ggtgttcttctctt 181  Q
    |||||||||||||||||  | ||||||||||| ||||||  ||||||||||||| ||| |||||| |||||||    
T  20972368 caagaagagtagacgtagcctgaagcgaggacaaaagggtgaactactataaaaatctcggtgttgttctctt 20972440  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 29831207 - 29831123
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaaggg-aaactactataaa 162  Q
    ||||||||||||| | | || || || || |||||||||||| ||||||  |||||||||||| |||||||  ||||||||||||    
T  29831207 tagtggaagtccttggtggagacattctccatcaagaagagtggacgtagaccgaagcgaggaagaaagggtgaactactataaa 29831123  T

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Target: scaffold0054 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 9608 - 9724
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtactccgaagcgaggacgaaa 146  Q
    |||| ||||||| | ||||||||| |||||||||||  |||| |  ||||   ||||||||||||||||| |||| || ||   ||||||||||||||||    
T  9608 aatcttaacaatttctaaacaattttcaacaatagtaaaagttcatgataacgacgttttctatcaagaatagtaaacatatctcgaagcgaggacgaaa 9707  T
Q  147 -gggaaactactataaa 162  Q
     ||| ||||||||||||    
T  9708 ggggcaactactataaa 9724  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 225709 - 225777
Alignment:
Q  47 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaa 116  Q
    |||||||||||| ||  |||| || |||||| ||||| ||||||| |||||| |||||||||||||||||    
T  225709 aatcataacaatttgctaacatttttcaaca-tagtgaaagtccttgatagagacgttttctatcaagaa 225777  T

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Target: scaffold0561 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 721 - 769
Alignment:
Q  79 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgta 127  Q
    ||||||||||||| | | ||| ||||||| |||||||||||||||||||    
T  721 tagtggaagtccttggtggatgcgttttccatcaagaagagtagacgta 769  T

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