View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9412_low_12 (Length: 299)
Name: NF9412_low_12
Description: NF9412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9412_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 43129455 - 43129181
Alignment:
| Q |
18 |
taaacaaggaggtgatgatcatggttgcagctatcagaatcgaagtaacaaagacaacaacaaaaatgctgtccatgaaggctcaacgaaggctcagnnn |
117 |
Q |
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| T |
43129455 |
taaacaaggaggtgatgatcatggttgcagctatcagaatgaaagtaacaaagacaacaacaaaaatgctgtccatgaaggctcaacgaaggctcagaaa |
43129356 |
T |
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| Q |
118 |
nnnnnnnnnnnnnngggctcaaaagggaagaatggtggctcagtgaaggtgaagaaggaggaggaatgctacgatccttcactgccagctgggataaatt |
217 |
Q |
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| T |
43129355 |
agaaaaaagaaaaagggctcaaaagggaagaatggtggctcagtgaaggtgaagaaggaggaggaatgctacgatccttcactgccagctgggataaatt |
43129256 |
T |
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| Q |
218 |
tacccatggagtggacttactaagccaacaattctaagggctccattttgaaggcaatgaaagtgagaataatcta |
293 |
Q |
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| T |
43129255 |
tacccatggagtggacttactaagccaacaattctaa-ggctccattttgaaggcaatgaaagtgagaataatcta |
43129181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 43139595 - 43139484
Alignment:
| Q |
135 |
ctcaaaagggaagaatggtggctcagtgaaggtgaagaaggaggaggaatgctacgatccttcactgccagctgggataaatttacccatggagtggact |
234 |
Q |
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| T |
43139595 |
ctcaaaagggaagaatggtgactcagagaaggtgaa-aagaaggaggaatgtcatgatcattctctgcctcctggaatagttttacccacggagtggact |
43139497 |
T |
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| Q |
235 |
tactaagccaaca |
247 |
Q |
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| T |
43139496 |
tactaatccaaca |
43139484 |
T |
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