View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9412_low_13 (Length: 280)
Name: NF9412_low_13
Description: NF9412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9412_low_13 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 24493404 - 24493177
Alignment:
| Q |
19 |
attatggtttctgaggttctaggctgatgtgggtgggccaagatattagggagtgggagccacggatgttgggaagtgggcagtaatggaggtgaggttt |
118 |
Q |
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| T |
24493404 |
attatggtttctgaggttctaggctgatgtgggtgggaaaagatattagggagtgggagccacggatgttgggaagtgagcagtaatggaggtgaggttt |
24493305 |
T |
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| Q |
119 |
gggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatgtaagagtg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24493304 |
gggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatataagagtg |
24493205 |
T |
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| Q |
219 |
atattgtgtagaataaccaaggaaaaca |
246 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
24493204 |
atattgtgtagaataaccaaggaaaaca |
24493177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 92769 - 92542
Alignment:
| Q |
19 |
attatggtttctgaggttctaggctgatgtgggtgggccaagatattagggagtgggagccacggatgttgggaagtgggcagtaatggaggtgaggttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
92769 |
attatggtttctgaggttctaggctgatgtgggtgggttaagatattagggagtgggagccacggatgttggggagtgggcagtaatggaggtgaggttt |
92670 |
T |
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| Q |
119 |
gggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatgtaagagtg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
92669 |
gggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcgatctagacaaatgtaagagtg |
92570 |
T |
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| Q |
219 |
atattgtgtagaataaccaaggaaaaca |
246 |
Q |
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| T |
92569 |
atattgtgtagaataaccaagtaaaaca |
92542 |
T |
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