View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9412_low_17 (Length: 259)
Name: NF9412_low_17
Description: NF9412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9412_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 4630462 - 4630695
Alignment:
| Q |
10 |
gcagagataataactctatgttctttgt-ttacacgaattatctgccatggcattgtgtaaccttctccttagccaaaaaatagtgatacccacaacaat |
108 |
Q |
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| T |
4630462 |
gcagagataataactctatgttctttgtcttacacgaattatctgccatggcattgtgtaaccttctccttagccaaaaaatagtgatacccacaacaat |
4630561 |
T |
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| Q |
109 |
tgttagcgtgaggcctgaaattgcaataacaacaacaaaagctgtggtgatcttaannnnnnnngacgactgggttgaaaattcttgatgccggggagat |
208 |
Q |
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| T |
4630562 |
tgttagcgtgaggcctgaaattgcaataacaacaacaaaagctgtggtgatcttaattttttttgacgactgggttgaaaattcttgatgccggggagat |
4630661 |
T |
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| Q |
209 |
agaccaatgaattttgaaatttgccctgcaagat |
242 |
Q |
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| T |
4630662 |
agaccaatgaattttgaaatttgccctgcaagat |
4630695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 4666499 - 4666643
Alignment:
| Q |
21 |
aactctatgttctttgtttac-acgaattatctgccatggcattgtgtaaccttctccttagccaaaaaatagtgatacccacaacaattgttagcgtga |
119 |
Q |
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| T |
4666499 |
aactctgtgttctttgttttcgacaagttatctgccatgacattgtgaaaccttctccttagccaaaaaactatgatacccacaataattgctagcacga |
4666598 |
T |
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| Q |
120 |
ggcctgaaattgcaataacaacaacaaaagctgtggtgatcttaa |
164 |
Q |
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| T |
4666599 |
ggcctgaaactgcaattacaacaacaaaagctgtggtgatcttaa |
4666643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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