View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9412_low_2 (Length: 441)
Name: NF9412_low_2
Description: NF9412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9412_low_2 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 441
Target Start/End: Complemental strand, 3732199 - 3731762
Alignment:
| Q |
15 |
acatgattcataaggtgaattgactcagaaggatttcgatgcacgtaaaaattttaaatatgaaatttttgtttggtttggttgataaaactt------- |
107 |
Q |
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| T |
3732199 |
acatgattcataaggtgaattggctcagaaggatttcgatgcacgtaaaaattttaaatatgaaatttttgtttggtttggttgataaaactttttaaaa |
3732100 |
T |
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| Q |
108 |
----actgataaaattataaagttcttctttacctattgtctgcatgctaaggtttagttcaataatgatgctattgagtattgaccatagttgagtttt |
203 |
Q |
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| T |
3732099 |
acttattgataaaattataaagttattctttacctattgtctgcatgctaaggtttagttcaataatgatgctattgagtattgactatagttgagtttt |
3732000 |
T |
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| Q |
204 |
aatttgtatttgatgtcattcattttttggtacataatcaggaattcaaattcacagaatacacagaagtgaaaaaatgttatccccatggataccatgg |
303 |
Q |
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| T |
3731999 |
aatttgtatttgatgtcattcattttttggtacataatcaggaattcaaattcacagaatacacagaagtgaaaaaatgttatccccatggataccatgg |
3731900 |
T |
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| Q |
304 |
agttgataaatgtggcagacctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataaccacacaagaaaggcttatcaagcat |
403 |
Q |
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| T |
3731899 |
agttgataaatgtggcagacctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataaccacacaagaaaggcttatcaagcat |
3731800 |
T |
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| Q |
404 |
catgtgtcagaacaagagaaaacactaagagtaagata |
441 |
Q |
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| T |
3731799 |
catgtgtcagaacaagagaaaacactaagagttagata |
3731762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 196 - 441
Target Start/End: Complemental strand, 11684327 - 11684080
Alignment:
| Q |
196 |
tgagttttaatttgtatttg--atgtcattcattttttggtacataatcaggaattcaaattcacagaatacacagaagtgaaaaaatgttatccccatg |
293 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |
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| T |
11684327 |
tgagttttaatttgttttttcaatgtcattcattttttggtacataatcaggaattcaaatttccagaatacacagaagtgaaaaaatgctatcctcatg |
11684228 |
T |
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| Q |
294 |
gataccatggagttgataaatgtggcagacctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataaccacacaagaaaggct |
393 |
Q |
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| T |
11684227 |
gattccatggggttgataaatgtggcaggtctgtgtatatcgagagaattgggatgatagatgttaacaaactgtggcaaataaccacacaagaaaggct |
11684128 |
T |
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| Q |
394 |
tatcaagcatcatgtgtcagaacaagagaaaacactaagagtaagata |
441 |
Q |
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| T |
11684127 |
tatcaagcatcatgtgtcagaacaagagaaaaccctaagagtaagata |
11684080 |
T |
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