View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9412_low_23 (Length: 238)
Name: NF9412_low_23
Description: NF9412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9412_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 16338038 - 16337816
Alignment:
| Q |
1 |
atggagttgatggagactcacacaataagcaagagataatattttaagattcggtgctcttgataagtccggaatctcaatcaggtcttcagagttatca |
100 |
Q |
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| T |
16338038 |
atggagttgatggagactcacacaataagcaagagataatattttaagattcggtgctcttgataagtccggaatctcaatcaggtcttcagagttatca |
16337939 |
T |
|
| Q |
101 |
agtttaatgattgttaaattgtcaagcttctgtaggaagaaagaaacatcacattgttcagaaatcattaaatttcactcatgattattaactaactaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16337938 |
agtttaatgattgttaaattgtcaagcttctgtaggaagaaagaaacatcacattgttcagaaatcattaaatttcactcatgattatcaactaactaaa |
16337839 |
T |
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| Q |
201 |
agagaaatctgaacataattaag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
16337838 |
agagaaatctgaacataattaag |
16337816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 16121126 - 16121342
Alignment:
| Q |
1 |
atggagttgatggagactcacacaataagcaagagataatattttaagattcggtgctcttgataagtccggaatctcaatcaggtcttcagagttatca |
100 |
Q |
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| T |
16121126 |
atggagttgatggagacttacacaataagcaagagataatattttaagattcggtgctcttgataagtccggaatctcaatcaggtcttcagagttatca |
16121225 |
T |
|
| Q |
101 |
agtttaatgattgttaaattgtcaagcttctgtaggaagaaagaaacatcacattgttcagaaatcattaaatttcactcatgattattaactaactaaa |
200 |
Q |
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| T |
16121226 |
agtttaatgattgttaaattgtcaagcttctgtaggaagaaagaaacatcacattgttcagaaatcattaaatttcactcatgattattaactaactaaa |
16121325 |
T |
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| Q |
201 |
agagaaatctgaacata |
217 |
Q |
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| T |
16121326 |
agagaaatctgaacata |
16121342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 12897496 - 12897342
Alignment:
| Q |
13 |
gagactcacacaataagcaagagataatattttaagattcggtgctcttgataagtccggaatctcaatcaggtcttcagagttatcaagtttaatgatt |
112 |
Q |
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||||||| | ||||||| |||||||| || || ||| || || || | |||||||| || |||||||||| ||||| |||| |||||| |||| || |
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| T |
12897496 |
gagactctcgcaataagaaagagatactagttcaagttttggcgccttagataagtctgggatctcaatcaagtctttggagtaatcaagcataataatc |
12897397 |
T |
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| Q |
113 |
gttaaattgtcaagcttctgtaggaagaaagaaacatcacattgttcagaaatca |
167 |
Q |
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| T |
12897396 |
atcaaattgtcaagcttctgtaggaaaaaagaaacatcacattgttcataaatca |
12897342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 36023180 - 36023236
Alignment:
| Q |
116 |
aaattgtcaagcttctgtaggaagaaagaaacatcacattgttcagaaatcattaaa |
172 |
Q |
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|||||| ||||||||||||| | |||| ||||||||||||||| ||| | ||||||| |
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| T |
36023180 |
aaattgccaagcttctgtagcatgaaacaaacatcacattgtttagagaccattaaa |
36023236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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