View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9412_low_26 (Length: 230)
Name: NF9412_low_26
Description: NF9412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9412_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 14504811 - 14504918
Alignment:
| Q |
17 |
cacagacttaaaactcatagcatcagtttctacatattctgtagttacgatcacaatcttcactggcttcttagtattgctgcaaccaccactagccata |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
14504811 |
cacagacttaaaactcatagcatcagtttcaacatattctgtagttataatcacaatcttcactggctttttactattgctgcaaccaccactagccata |
14504910 |
T |
|
| Q |
117 |
ttcaagta |
124 |
Q |
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|||||||| |
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| T |
14504911 |
ttcaagta |
14504918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 14497158 - 14497259
Alignment:
| Q |
17 |
cacagacttaaaactcatagcatcagtttctacatattctgtagttacgatcacaatcttcactggcttcttagtattgctgcaaccaccactagccata |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||| |
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| T |
14497158 |
cacagacttaaaactcatagcatcagtttcaacatattctgtagttacaatcacaatcttcactggctttttactattgctgcaaccaccacttgccata |
14497257 |
T |
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| Q |
117 |
tt |
118 |
Q |
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|| |
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| T |
14497258 |
tt |
14497259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 14500821 - 14500905
Alignment:
| Q |
37 |
catcagtttctacatattctgtagttacgatcacaatcttcactggcttcttagtattgctgcaaccaccactagccatattcaa |
121 |
Q |
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|||||||||| ||||||||||| || | || |||||||||| |||||| ||||||||||||||||||||||| |||||||||| |
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| T |
14500821 |
catcagtttccacatattctgtggtgataattacaatcttcaatggctttttagtattgctgcaaccaccactctccatattcaa |
14500905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 14499437 - 14499538
Alignment:
| Q |
23 |
cttaaaactcatagcatcagtttctacatattctgtagttacgatcacaatcttcactggcttcttagtattgctgcaaccaccactagccatattcaag |
122 |
Q |
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|||||||||||| ||| ||||| |||||||||||||| || |||||||| ||||||| ||||| |||| |||||||||||||| ||||||||||| |
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| T |
14499437 |
cttaaaactcatgacatgagtttacacatattctgtagtcacaatcacaattttcactgtattcttgttattactgcaaccaccactctccatattcaag |
14499536 |
T |
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| Q |
123 |
ta |
124 |
Q |
| |
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|| |
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| T |
14499537 |
ta |
14499538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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