View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9412_low_28 (Length: 227)
Name: NF9412_low_28
Description: NF9412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9412_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 394440 - 394230
Alignment:
| Q |
9 |
aaaaaatattaaaaatagaaattatattcattttttgttggtacaaattagtgataatgtcaatattacataaataggtttgtgaggttaaaactattat |
108 |
Q |
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| T |
394440 |
aaaaaaaattaaaaatagaaattatattcattttttgttggtacaaattagtgataatgtcaatattacataaataggtttgtacggttaaaactattat |
394341 |
T |
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| Q |
109 |
ggaataaaattcatcattttcttnnnnnnnnggatctatctaattcttttacatgatcgaaaacctcaaaacacgtcaaaccacaaaaccaccaacaccc |
208 |
Q |
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| T |
394340 |
gaaataaaattcatctttttctt-aaaaaaaggatctacctaatccttttatatgatcg-aaacctcaaaacacgtcaaaccacaaaacaaccaacaccc |
394243 |
T |
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| Q |
209 |
ctataacaccata |
221 |
Q |
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|||| |||||||| |
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| T |
394242 |
ctatcacaccata |
394230 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 11449661 - 11449709
Alignment:
| Q |
155 |
ttttacatgatcgaaaacctcaaaacacgtcaaaccacaaaaccaccaa |
203 |
Q |
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||||||| ||| || ||||||||||||| |||| ||||||||||||||| |
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| T |
11449661 |
ttttacacgattgagaacctcaaaacacatcaagccacaaaaccaccaa |
11449709 |
T |
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