View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9412_low_34 (Length: 202)
Name: NF9412_low_34
Description: NF9412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9412_low_34 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 18805775 - 18805958
Alignment:
| Q |
19 |
gttatctgttggtgttttgtgtgaaggcaaggtgtgaatgtacaaggatattttgcatggtcccttttggacaattttgaatggcaagatggatacacct |
118 |
Q |
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| T |
18805775 |
gttatctgttgctgttttgtgtgaaggcaaggtgtgaatgtacaaggatattttgcatggtcccttttcgacaattttgaatggcaagacggatacacct |
18805874 |
T |
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| Q |
119 |
tacgttttggaattaactttgttgatttcgaaaataatcttaaaagataccctaagctctctgcccgttggcttaggaagtttc |
202 |
Q |
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| T |
18805875 |
tacgttttggaattaactttgttgatttcaaaaataatcttaaaagataccctaagctctctgcccgttggtttaggaagtttc |
18805958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 4598689 - 4598520
Alignment:
| Q |
33 |
ttttgtgtgaaggcaaggtgtgaatgtacaaggatattttgcatggtcccttttggacaattttgaatggcaagatggatacaccttacgttttggaatt |
132 |
Q |
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| T |
4598689 |
ttttgtgtgtaggcgtggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttgaatggagtgacggatacaccgtgcgttttggaatt |
4598590 |
T |
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| Q |
133 |
aactttgttgatttcgaaaataatcttaaaagataccctaagctctctgcccgttggcttaggaagtttc |
202 |
Q |
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| T |
4598589 |
aactttgttgattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaaatttc |
4598520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 4623203 - 4623033
Alignment:
| Q |
35 |
ttgtgtgaaggcaaggtgtgaatgtacaaggatattttgcatggtcccttttggacaattttgaatggcaagatggatacaccttacgttttggaattaa |
134 |
Q |
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| T |
4623203 |
ttgtgtgaaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaa |
4623104 |
T |
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| Q |
135 |
ctttgttgatttcgaaaa---taatcttaaaagataccctaagctctctgcccgttggcttaggaagtttc |
202 |
Q |
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| T |
4623103 |
ctttgttgattatgagaatggtcatcttacaagacaccctaagctctctgcccggtggtttaggaagtttc |
4623033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 25015913 - 25015753
Alignment:
| Q |
42 |
aaggcaaggtgtgaatgtacaaggatattttgcatggtcccttttggacaattttgaatggcaagatggatacaccttacgttttggaattaactttgtt |
141 |
Q |
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| T |
25015913 |
aaggcatggtgtgaaagtacaaggatattttgcatggtcacttttggacaactttgaatggctggctggatacactagacgttttggaatgaactatgtt |
25015814 |
T |
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| Q |
142 |
gatttcgaaaataatcttaaaagataccctaagctctctgcccgttggcttaggaagtttc |
202 |
Q |
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| T |
25015813 |
aattacaatgataatcttaaaagacaccaaaagctctctgcccattggtttaggaactttc |
25015753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 25037193 - 25037033
Alignment:
| Q |
42 |
aaggcaaggtgtgaatgtacaaggatattttgcatggtcccttttggacaattttgaatggcaagatggatacaccttacgttttggaattaactttgtt |
141 |
Q |
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| T |
25037193 |
aaggcatggtgtgaaagtacaaggatattttgcatggtcacttttagacaactttgaatggctggccggatacagaagacgttttggaattaactttgta |
25037094 |
T |
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| Q |
142 |
gatttcgaaaataatcttaaaagataccctaagctctctgcccgttggcttaggaagtttc |
202 |
Q |
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| T |
25037093 |
gattacaaagataatcttaaaagacaccaaaagctttctgcccattggtttaggaattttc |
25037033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 25253867 - 25253907
Alignment:
| Q |
64 |
ggatattttgcatggtcccttttggacaattttgaatggca |
104 |
Q |
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| T |
25253867 |
ggatactttgcatggtccttgttggacaattttgaatggca |
25253907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 30363044 - 30363091
Alignment:
| Q |
55 |
aatgtacaaggatattttgcatggtcccttttggacaattttgaatgg |
102 |
Q |
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| T |
30363044 |
aatgtaaaaggatattttgcgtggtcgctattggacaattttgaatgg |
30363091 |
T |
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